Evidence map›Paper›PMID 12297985›Full record

ArticleAmerican journal of human genetics2002

Genomic rearrangements resulting in PLP1 deletion occur by nonhomologous end joining and cause different dysmyelinating phenotypes in males and females.

Ken Inoue, Hitoshi Osaka, Virginia C Thurston, Joe T R Clarke, Akira Yoneyama, Lisa Rosenbarker, Thomas D Bird, M E Hodes, Lisa G Shaffer, James R Lupski

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in American journal of human genetics, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
4.9field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

79 citing papers in PubMed, 159 citations in OpenAlex.

  1. Article
  2. Article
  3. Microdeletion in distal PLP1 enhancers causes hereditary spastic paraplegia 2.Annals of clinical and translational neurology · 2023
    Article
  4. Review
  5. Article
  6. Review
  7. Review
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Neurogenetics of Pelizaeus-Merzbacher disease.Handbook of clinical neurology · 2018
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review

19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 3 countries.

Ken InoueDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX 77030, USA.
Hitoshi Osaka
Virginia C Thurston
Joe T R Clarke
Akira Yoneyama
Lisa Rosenbarker
Thomas D Bird
M E Hodes
Lisa G Shaffer
James R Lupski
Baylor College of Medicine · USHospital for Sick Children · CAIndiana University – Purdue University Indianapolis · USIndiana University School of MedicineNational Rehabilitation Center · KRUniversity of Washington · US

Funding

UNDERSTANDING FXTAS AMONG MALES WITH THE FMR1 PREMUTATIONP30HD024064 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI TOLIAS, KIMBERLY R · 1988 to 2013
$29.4M
REPLICATING A PEER INTERVENTION IN A MULTI-CULTURAL CITYR01HD038420 · NICHD · UNIVERSITY OF WASHINGTON · PI MORRISON, DIANE M. · 1999 to 2003
$2.7M
CMT Peripheral Neuropathy: IV. Genes and PathogenesisR01NS027042 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI LUPSKI, JAMES R. · 1990 to 2005
$2.7M
NICHD NIH HHS P01 HD38420NICHD NIH HHS P30 HD024064NICHD NIH HHS P30 HD24064NICHD NIH HHS R01 HD038420NINDS NIH HHS R01 NS027042NINDS NIH HHS R01 NS27042
6 · The paper itself

Abstract

In the majority of patients with Pelizaeus-Merzbacher disease, duplication of the proteolipid protein gene PLP1 is responsible, whereas deletion of PLP1 is infrequent. Genomic mechanisms for these submicroscopic chromosomal rearrangements remain unknown. We identified three families with PLP1 deletions (including one family described elsewhere) that arose by three distinct processes. In one family, PLP1 deletion resulted from a maternal balanced submicroscopic insertional translocation of the entire PLP1 gene to the telomere of chromosome 19. PLP1 on the 19qtel is probably inactive by virtue of a position effect, because a healthy male sibling carries the same der(19) chromosome along with a normal X chromosome. Genomic mapping of the deleted segments revealed that the deletions are smaller than most of the PLP1 duplications and involve only two other genes. We hypothesize that the deletion is infrequent, because only the smaller deletions can avoid causing either infertility or lethality. Analyses of the DNA sequence flanking the deletion breakpoints revealed Alu-Alu recombination in the family with translocation. In the other two families, no homologous sequence flanking the breakpoints was found, but the distal breakpoints were embedded in novel low-copy repeats, suggesting the potential involvement of genome architecture in stimulating these rearrangements. In one family, junction sequences revealed a complex recombination event. Our data suggest that PLP1 deletions are likely caused by nonhomologous end joining.

Indexed as

Gene DeletionGene RearrangementMyelin Proteolipid ProteinBase SequenceChildCloning, MolecularDosage Compensation, GeneticFemaleHumansLipoproteinsMaleMeiosisMembrane ProteinsMolecular Sequence DataPedigreePelizaeus-Merzbacher DiseaseLipoproteinsMembrane ProteinsMyelin Proteolipid ProteinPLP1 protein, human

Identifiers

PMID12297985
PMCPMC378540
OpenAlexW2055937107

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.