Evidence map›Paper›PMID 12270829›Full record

ArticleJournal of bacteriology2002

Genes encoding specific nickel transport systems flank the chromosomal urease locus of pathogenic yersiniae.

Florent Sebbane, Marie-Andrée Mandrand-Berthelot, Michel Simonet

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 51 citations in OpenAlex.

  1. Article
  2. Zoonoses (Shannon, Ireland) · 2023
    Article
  3. Article
  4. Article
  5. Ni(II) Interactions in BorealFrontiers in microbiology · 2019
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Biosynthesis of the urease metallocenter.The Journal of biological chemistry · 2013
    Review
  12. Mechanisms of nickel toxicity in microorganisms.Metallomics : integrated biometal science · 2011
    Review
  13. Article
  14. Interplay of metal ions and urease.Metallomics : integrated biometal science · 2009
    Review
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Florent SebbaneEquipe Inserm E9919-Université JE2225-Institut Pasteur de Lille, Département de Pathogenèse des Maladies Infectieuses, Institut de Biologie de Lille, F-59021 Lille, France.
Marie-Andrée Mandrand-Berthelot
Michel Simonet
Inserm · FRInstitut de Biologie de Lille · FRInstitut National des Sciences Appliquées de Lyon · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transition metal nickel is an essential cofactor for a number of bacterial enzymes, one of which is urease. Prior to its incorporation into metalloenzyme active sites, nickel must be imported into the cell. Here, we report identification of two loci corresponding to nickel-specific transport systems in the gram-negative, ureolytic bacterium Yersinia pseudotuberculosis. The loci are located on each side of the chromosomal urease gene cluster ureABCEFGD and have the same orientation as the latter. The yntABCDE locus upstream of the ure genes encodes five predicted products with sequence homology to ATP-binding cassette nickel permeases present in several gram-negative bacteria. The ureH gene, located downstream of ure, encodes a single-component carrier which displays homology to polypeptides of the nickel-cobalt transporter family. Transporters with homology to these two classes are also present (again in proximity to the urease locus) in the other two pathogenic yersiniae, Y. pestis and Y. enterocolitica. An Escherichia coli nikA insertion mutant recovered nickel uptake ability following heterologous complementation with either the ynt or the ureH plasmid-borne gene of Y. pseudotuberculosis, demonstrating that each carrier is necessary and sufficient for nickel transport. Deletion of ynt in Y. pseudotuberculosis almost completely abolished bacterial urease activity, whereas deletion of ureH had no effect. Nevertheless, rates of nickel transport were significantly altered in both ynt and ureH mutants. Furthermore, the ynt ureH double mutant was totally devoid of nickel uptake ability, thus indicating that Ynt and UreH constitute the only routes for nickel entry. Both Ynt and UreH show selectivity for Ni(2+) ions. This is the first reported identification of genes coding for both kinds of nickel-specific permeases situated adjacent to the urease gene cluster in the genome of a microorganism.

Indexed as

Amino Acid SequenceATP-Binding Cassette TransportersBacterial ProteinsBiological TransportChromosome MappingChromosomes, BacterialEscherichia coliGene Expression Regulation, BacterialHumansMembrane Transport ProteinsMolecular Sequence DataNickelSequence AlignmentSequence Analysis, DNAUreaseYersinia pseudotuberculosisATP-Binding Cassette TransportersBacterial ProteinsMembrane Transport ProteinsNickelUreaseUreH protein, Yersinia pseudotuberculosisYnt protein, Yersinia pseudotuberculosis

Identifiers

PMID12270829
PMCPMC139606
OpenAlexW2089201331

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.