Evidence map›Paper›PMID 12239324›Full record

ArticleJournal of virology2002

Rev inhibition strongly affects intracellular distribution of human immunodeficiency virus type 1 RNAs.

Dusan Cmarko, Stig-Ove Bøe, Catia Scassellati, Anne Marie Szilvay, Svend Davanger, Xiang-Dong Fu, Gunnar Haukenes, Karl-Henning Kalland, Stanislav Fakan

Abstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.3field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 28 citations in OpenAlex.

  1. Review
  2. Viruses in the Nucleus.Cold Spring Harbor perspectives in biology · 2021
    Review
  3. Article
  4. Article
  5. Detection of viral RNA by fluorescence in situ hybridization (FISH).Journal of visualized experiments : JoVE · 2012
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Dusan CmarkoCentre of Electron Microscopy, University of Lausanne, 27 Bugnon, CH-1005 Lausanne, Switzerland.
Stig-Ove Bøe
Catia Scassellati
Anne Marie Szilvay
Svend Davanger
Xiang-Dong Fu
Gunnar Haukenes
Karl-Henning Kalland
Stanislav Fakan
University of Lausanne · CHUniversity of Bergen · NOUniversity of California, San Diego · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To define the human immunodeficiency virus type 1 (HIV-1) RNA maturation pathways, we analyzed the intracellular distribution of HIV-1 RNA and the viral regulatory proteins Rev and Tat in transfected COS cells and HIV-1-infected lymphoid C8166 cells by means of ultrastructural in situ hybridization using antisense RNA probes and immunoelectron microscopy. The intranuclear viral RNA occurs in ribonucleoprotein fibrils in the perichromatin and interchromatin regions. The simultaneous demonstration of Rev, Tat, Br-labeled RNA, and cellular proteins SC35 and CRM1 in such fibrils reveals the potential of Rev to associate with nascent HIV pre-mRNA and its splicing complex and transport machinery. In a rev-minus system, the env intron-containing, incompletely spliced viral RNAs are revealed only in the nucleus, indicating that Rev is required to initiate the transport to the cytoplasm. Moreover, env intron sequences frequently occur in the periphery of interchromatin granule clusters, while the probe containing the rev exon sequence does not associate with this nucleoplasmic domain. When cells were treated with the CRM1 inhibitor leptomycin B in the presence of Rev protein, the env intron containing HIV RNAs formed clusters throughout the nucleoplasm and accumulated at the nuclear pores. This suggests that Rev is necessary and probably also sufficient for the accumulation of incompletely spliced HIV RNAs at the nuclear pores while CRM1 is needed for translocation across the nuclear pore complex.

Indexed as

Receptors, Cytoplasmic and NuclearRibonucleoproteinsRNA SplicingActive Transport, Cell NucleusAnimalsCell NucleusChlorocebus aethiopsCOS CellsExonsExportin 1 ProteinGene Products, revGene Products, tatGenes, envHIV-1HumansIntracellular FluidExportin 1 ProteinGene Products, revGene Products, tatKaryopherinsNuclear ProteinsReceptors, Cytoplasmic and Nuclearrev Gene Products, Human Immunodeficiency VirusRibonucleoproteinsRNA, MessengerRNA, ViralSerine-Arginine Splicing FactorsSRSF2 protein, humantat Gene Products, Human Immunodeficiency Virus

Identifiers

PMID12239324
PMCPMC136536
OpenAlexW2147292596

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.