Evidence map›Paper›PMID 12239318›Full record

ArticleJournal of virology2002

Selective translation of eukaryotic mRNAs: functional molecular analysis of GRSF-1, a positive regulator of influenza virus protein synthesis.

John C Kash, Dawn M Cunningham, Maria W Smit, Youngwoo Park, David Fritz, Jeffrey Wilusz, Michael G Katze

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 59 citations in OpenAlex.

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  19. Systems-based candidate genes for human response to influenza infection.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2009
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

John C KashDepartment of Microbiology, University of Washington School of Medicine, Seattle, Washington 98195, USA.
Dawn M Cunningham
Maria W Smit
Youngwoo Park
David Fritz
Jeffrey Wilusz
Michael G Katze
University of Washington · USRutgers New Jersey Medical School

Funding

YILMA SIV VACCINIA VACCINE TRIALP51RR000166 · NCRR · UNIVERSITY OF WASHINGTON · PI CHAMBERLAIN, JEFFREY S · 1985 to 2011
$161.1M
TRANSLATION CONTROL OF INFLUENZA VIRUS INFECTED CELLSR01AI022646 · NIAID · UNIVERSITY OF WASHINGTON · PI KATZE, MICHAEL G · 1986 to 2009
$3.4M
Regulation of mRNA Decapping in Human CellsR01GM063832 · NIGMS · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI WILUSZ, JEFFREY · 2001 to 2004
$1.0M
MECHANISM OF REGULATION OF TNF MRNA STABILITYR01CA080062 · NCI · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI WILUSZ, JEFFREY · 1999 to 2003
$889k
HEPATITIS C VIRUS AND INTERFERON--CONTROL OF PKR BY NS5AR01AI041629 · NIAID · UNIVERSITY OF WASHINGTON · PI KATZE, MICHAEL G · 1997 to 2001
$465k
TRANSLATIONAL CONTROL OF INFLUENZA VIRAL MRNASF32GM020785 · NIGMS · UNIVERSITY OF WASHINGTON · PI KASH, JOHN C · 2001 to 2002
$47k
NCI NIH HHS CA 80062NCRR NIH HHS P51 RR000166NCRR NIH HHS RR 00166NIAID NIH HHS AI 22646NIAID NIH HHS AI 41629NIAID NIH HHS R01 AI022646NIGMS NIH HHS F32 GM020785NIGMS NIH HHS GM 20785NIGMS NIH HHS GM 63832NIGMS NIH HHS R01 GM063832
6 · The paper itself

Abstract

To understand the regulation of cap-dependent translation initiation mediated by specific 5' untranslated region (UTR) RNA-protein interactions in mammalian cells, we have studied the selective translation of influenza virus mRNAs. Previous work has shown that the host cell mRNA binding protein guanine-rich sequence factor 1 (GRSF-1) bound specifically to conserved viral 5' UTR sequences and stimulated translation of viral 5' UTR-driven mRNAs in vitro. In the present study, we have characterized the functional domains of GRSF-1 and mapped the RNA binding activity of GRSF-1 to RRM 2 (amino acids 194 to 275) with amino-terminal deletion glutathione S-transferase (GST)-GRSF-1 proteins. When these mutants were assayed for functional activity in vitro, deletion of an Ala-rich region (Delta[2-94]) appeared to diminish translational stimulation, while deletion of the Ala-rich region in addition to RRM 1 (Delta[2-194]) resulted in a 4-fold increase in translational activation over wild-type GRSF-1 (an overall 20-fold increase in activity). We have also mapped the GRSF-1 RNA binding site on influenza virus NP and NS1 5' UTRs, which was determined to be the sequence AGGGU. With polysome fractionation and cDNA microarray analysis, we have identified cellular and viral mRNAs containing putative GRSF-1 binding sites that were transcriptionally up-regulated and selectively recruited to polyribosomes following influenza virus infection. Taken together, these studies demonstrate that RRM 2 is critical for GRSF-1 RNA binding and translational activity. Further, our data suggest GRSF-1 functions by selectively recruiting cellular and viral mRNAs containing 5' UTR GRSF-1 binding sites to polyribosomes, which is mediated through interactions with cellular proteins.

Indexed as

Poly(A)-Binding ProteinsProtein Biosynthesis5' Untranslated RegionsBase SequenceBinding SitesEukaryotic CellsHeLa CellsHumansInfluenza A virusMolecular Sequence DataNucleocapsid ProteinsNucleoproteinsOrthomyxoviridaePolyribosomesRecombinant Fusion ProteinsRNA-Binding Proteins5' Untranslated RegionsGRSF1 protein, humanINS1 protein, influenza virusM-protein, influenza virusNP protein, Influenza A virusNucleocapsid ProteinsNucleoproteinsPoly(A)-Binding ProteinsRecombinant Fusion ProteinsRNA-Binding ProteinsRNA, ViralViral Core ProteinsViral Matrix ProteinsViral Nonstructural ProteinsViral Proteins

Identifiers

PMID12239318
PMCPMC136571
OpenAlexW2141573210

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.