Evidence map›Paper›PMID 12237409›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

Direct stimulation of transcription by negative cofactor 2 (NC2) through TATA-binding protein (TBP).

Yong Cang, Gregory Prelich

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  18. Regulation of nuclear import and export of negative cofactor 2.The Journal of biological chemistry · 2009
    Article
  19. Article
  20. The dynamic personality of TATA-binding protein.Trends in biochemical sciences · 2009
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yong CangDepartment of Molecular Genetics, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY 10461, USA.
Gregory Prelich

Funding

GENETIC ANALYSIS OF BASAL TRANSCRIPTION IN YEASTR01GM052486 · NIGMS · YESHIVA UNIVERSITY · PI PRELICH, GREGORY · 1996 to 2009
$3.4M
NIGMS NIH HHS GM52486NIGMS NIH HHS R01 GM052486
6 · The paper itself

Abstract

Negative cofactor 2 (NC2) is an evolutionarily conserved transcriptional regulator that was originally identified as an inhibitor of basal transcription. Its inhibitory mechanism has been extensively characterized; NC2 binds to the TATA-binding protein (TBP), blocking the recruitment of TFIIA and TFIIB, and thereby inhibiting preinitiation complex assembly. NC2 is also required for expression of many yeast genes in vivo and stimulates TATA-less transcription in a Drosophila in vitro transcription system, but the mechanism responsible for the NC2-mediated stimulation of transcription is not understood. Here we establish that yeast NC2 can directly stimulate activated transcription from TATA-driven promoters both in vivo and in vitro, and moreover that this positive role requires the same surface of TBP that mediates the NC2 repression activity. On the basis of these results, we propose a model to explain how NC2 can mediate both repression and activation through the same surface of TBP.

Indexed as

Saccharomyces cerevisiae ProteinsTranscription, GeneticAnimalsbeta-GalactosidaseBlotting, NorthernDNA, ComplementaryDrosophilaFungal ProteinsGenome, FungalModels, BiologicalMutagenesis, Site-DirectedMutationPhenotypePhosphoproteinsPlasmidsPromoter Regions, Geneticbeta-GalactosidaseBUR6 protein, S cerevisiaeDNA, Complementarydown-regulator of transcription 1Fungal ProteinsPhosphoproteinsRepressor ProteinsRNARNA, MessengerSaccharomyces cerevisiae ProteinsTATA-Box Binding ProteinTranscription Factors

Identifiers

PMID12237409
PMCPMC130528

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.