Evidence map›Paper›PMID 12232783›Full record

ArticleMolecular psychiatry2002

Regulatory region variability in the human presenilin-2 (PSEN2) gene: potential contribution to the gene activity and risk for AD.

N Riazanskaia, W J Lukiw, A Grigorenko, G Korovaitseva, G Dvoryanchikov, Y Moliaka, M Nicolaou, L Farrer, N G Bazan, El Rogaev

Abstract read
PubMed Publisher
In one paragraph

Article in Molecular psychiatry, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 44 citations in OpenAlex.

  1. Identification of chemicals targeting dementia genes and pathways in the Comparative Toxicogenomics Database.Alzheimer's & dementia : the journal of the Alzheimer's Association · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

N RiazanskaiaLaboratory of Molecular Brain Genetics, Research Center of Mental Health, Russian Academy of Medical Sciences of Russia, Moscow 113152, Russia.
W J Lukiw
A Grigorenko
G Korovaitseva
G Dvoryanchikov
Y Moliaka
M Nicolaou
L Farrer
N G Bazan
El Rogaev
Mental Health Research Center of Russian Academy of Medical Sciences · RUBoston University · USLouisiana State University Health Sciences Center New Orleans · US

Funding

GENETIC EPIDEMIOLOGICAL STUDIES OF ALZHEIMERS DISEASER01AG009029 · NIA · BOSTON UNIVERSITY MEDICAL CAMPUS · PI FARRER, LINDSAY A. · 1991 to 2007
$14.7M
ROLE OF PHOSPHOLIPIDS AND ARACHIDONIC ACID IN EPILEPSYR01NS023002 · NINDS · LSU HEALTH SCIENCES CENTER · PI BAZAN, NICOLAS GUILLERMO · 1986 to 2007
$1.6M
Gene Expression in Alzheimer's DiseaseR01AG018031 · NIA · LSU HEALTH SCIENCES CENTER · PI LUKIW, WALTER J · 2001 to 2006
$1.4M
NIA NIH HHS AG 09029NIA NIH HHS AG 18031NIA NIH HHS AG 95004NINDS NIH HHS NS 23002
6 · The paper itself

Abstract

We have analyzed the 5'-upstream promoter region of the presenilin 2 gene (PSEN2) for regulatory elements and examined Alzheimer disease (AD) patients and non-demented individuals for polymorphisms in the 5' upstream promoter region of the PSEN2 gene. Direct sequencing analysis detected a common single adenine (A) nucleotide deletion polymorphism in the upstream promoter region of the PSEN2 gene. Examination of cohorts of AD patients and age-matched control individuals revealed no statistically significant differences in the frequency of this polymorphism when compared with the total sample of AD patients and control individuals. However, subgroup and regression analysis suggested that the relatively rare -A/-A genotype increases risk of AD among subjects lacking apolipoprotein E (APOE) epsilon4 and among persons ages 65 years and younger. DNA sequence and DNA-protein binding analysis demonstrated that this mutation negates binding with putative repressor transcription factor (TF), interferon regulatory factor 2 (IRF2), in nuclear extracts prepared from the aged human brain neocortex. However this mutation creates a potential regulatory element, C/EBPbeta, that is responsive to pro-inflammatory (PI) induction. The expression activity assay with luciferase reporter gene into normal human neural progenitor cells in primary culture shows that the mutant PSEN2 regulatory region exhibits a 1.8-fold higher level of basal expression and is sensitive to IL-1beta and Abeta42, but that it is synergistically induced 3.2-fold over the wild-type PSEN2 by [IL-1beta+Abeta42]. These results suggest that under Pl and oxygen stress conditions relatively minor variations in PSEN2 promoter DNA sequence structure can enhance PSEN2 gene expression and that consequently these may play a role in the induction and/or proliferation of a Pl response in AD brain.

Indexed as

5' Untranslated RegionsAgedAlzheimer DiseaseCells, CulturedDNA Mutational AnalysisElectrophoretic Mobility Shift AssayGenes, ReporterGenetic Predisposition to DiseaseGenetic VariationHumansLuciferasesMembrane ProteinsMiddle AgedOxidative StressPolymorphism, GeneticPresenilin-25' Untranslated RegionsLuciferasesMembrane ProteinsPresenilin-2PSEN2 protein, humanTranscription Factors

Identifiers

PMID12232783
OpenAlexW2319641678

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.