Evidence map›Paper›PMID 12215535›Full record

ArticleMolecular and cellular biology2002

The SWI/SNF chromatin-remodeling factor stimulates repair by human excision nuclease in the mononucleosome core particle.

Ryujiro Hara, Aziz Sancar

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 141 citations in OpenAlex.

  1. Review
  2. DNA Repair in Nucleosomes: Insights from Histone Modifications and Mutants.International journal of molecular sciences · 2024
    Review
  3. Review
  4. Article
  5. Review
  6. Epigenetic Regulation of Nucleotide Excision Repair.Frontiers in cell and developmental biology · 2022
    Review
  7. Review
  8. ACTL6A promotes repair of cisplatin-induced DNA damage, a new mechanism of platinum resistance in cancer.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  9. Review
  10. Article
  11. Review
  12. Targeting DNA repair in cancer: current state and novel approaches.Cellular and molecular life sciences : CMLS · 2020
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Review
  18. Nucleosome remodelling, DNA repair and transcriptional regulation build negative feedback loops in cancer and cellular ageing.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
  19. Review
  20. Genome-wide kinetics of DNA excision repair in relation to chromatin state and mutagenesis.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Ryujiro HaraDepartment of Biochemistry and Biophysics, School of Medicine, University of North Carolina, Chapel Hill, 27599, USA.
Aziz Sancar
University of North Carolina at Chapel Hill · US

Funding

STRUCTURE AND FUNCTION OF UVRABC EXCISION NUCLEASER01GM032833 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SANCAR, AZIZ · 1985 to 2015
$8.9M
NIGMS NIH HHS GM32833NIGMS NIH HHS R01 GM032833
6 · The paper itself

Abstract

To investigate the role of chromatin remodeling in nucleotide excision repair, we prepared mononucleosomes with a 200-bp duplex containing an acetylaminofluorene-guanine (AAF-G) adduct at a single site. DNase I footprinting revealed a well-phased nucleosome structure with the AAF-G adduct near the center of twofold symmetry of the nucleosome core. This mononucleosome substrate was used to examine the effect of the SWI/SNF remodeling complex on the activity of human excision nuclease reconstituted from six purified excision repair factors. We found that the three repair factors implicated in damage recognition, RPA, XPA, and XPC, stimulate the remodeling activity of SWI/SNF, which in turn stimulates the removal of the AAF-G adduct from the nucleosome core by the excision nuclease. This is the first demonstration of the stimulation of nucleotide excision repair of a lesion in the nucleosome core by a chromatin-remodeling factor and contrasts with the ACF remodeling factor, which stimulates the removal of lesions from internucleosomal linker regions but not from the nucleosome core.

Indexed as

Drosophila Proteins2-AcetylaminofluoreneBase SequenceChromatinDeoxyguanosineDeoxyribonucleasesDNADNA-Binding ProteinsDNA FootprintingDNA LigasesDNA RepairEnzyme ActivationHumansMacromolecular SubstancesModels, BiologicalMolecular Sequence Data2-AcetylaminofluoreneChromatinDeoxyguanosineDeoxyribonucleasesDNADNA-Binding ProteinsDNA LigasesDrosophila ProteinsMacromolecular SubstancesN-(deoxyguanosin-8-yl)acetylaminofluoreneNucleosomesReplication Protein ARibonucleoprotein, U1 Small NuclearRNA-Binding ProteinsRPA1 protein, humansnf protein, DrosophilaXeroderma Pigmentosum Group A ProteinXPA protein, humanXPC protein, human

Identifiers

PMID12215535
PMCPMC134043
OpenAlexW2097309081

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.