Evidence map›Paper›PMID 12215259›Full record

ArticleDNA and cell biology2002

The mouse alpha-fetoprotein promoter is repressed in HepG2 hepatoma cells by hepatocyte nuclear factor-3 (FOXA).

Mei-Chuan Huang, Kelly Ke Li, Brett T Spear

Open access · greenAbstract read
In one paragraph

Article in DNA and cell biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Alpha-fetoprotein: A Multifaceted Player in Cancer Biology.Euroasian journal of hepato-gastroenterology
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mei-Chuan HuangDepartment of Microbiology, University of Kentucky, Lexington, Kentucky 40536-0298, USA.
Kelly Ke Li
Brett T Spear
University of Kentucky · US

Funding

ENHANCERS AND LIVER-SPECIFIC TRANSCRIPTIONR01DK051600 · NIDDK · UNIVERSITY OF KENTUCKY · PI SPEAR, BRETT T · 1998 to 2001
$378k
GENETIC SCHEMES TO CLONE MAMMALIAN TRANSCRIPTION FACTORSR29GM045253 · NIGMS · UNIVERSITY OF KENTUCKY · PI SPEAR, BRETT T · 1991 to 1995
–
NIDDK NIH HHS DK51600NIGMS NIH HHS GM45253
6 · The paper itself

Abstract

The mouse alpha-fetoprotein gene is expressed at high levels in the fetal liver and is transcriptionally silenced at birth. The repression is governed, at least in part, by the 250 base pair (bp) AFP promoter. We show here that the AFP promoter is dramatically repressed by HNF3 in HepG2 hepatoma cells. This repression is governed by the region between -205 and -150. Furthermore, this fragment can confer HNF3-mediated repression on a heterologous promoter. The repression is abolished by a mutation that is centered at -165. EMSA analyses using in vivo and in vitro synthesized proteins indicate that HNF3 proteins do not bind DNA from the -205 to -150 region. We propose that HNF3 represses AFP promoter activity through indirect mechanisms that modulate the binding or activity of a liver-enriched factor that interacts with the -165 region of the AFP promoter.

Indexed as

Gene SilencingPromoter Regions, GeneticTranscription Factorsalpha-FetoproteinsAnimalsBase SequenceBinding SitesCarcinoma, HepatocellularDNA-Binding ProteinsHeLa CellsHepatocyte Nuclear Factor 3-alphaHepatocyte Nuclear Factor 3-betaHumansMiceMutationNuclear Proteinsalpha-FetoproteinsDNA-Binding ProteinsFOXA1 protein, humanFoxa1 protein, mouseFOXA2 protein, humanFoxa2 protein, mouseHepatocyte Nuclear Factor 3-alphaHepatocyte Nuclear Factor 3-betaNuclear ProteinsRepressor ProteinsTranscription Factors

Identifiers

PMID12215259
PMCPMC1563500
OpenAlexW2054518067

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.