Evidence map›Paper›PMID 12200364›Full record

ArticleBlood2002

X-linked thrombocytopenia with thalassemia from a mutation in the amino finger of GATA-1 affecting DNA binding rather than FOG-1 interaction.

Channing Yu, Kathy K Niakan, Mark Matsushita, George Stamatoyannopoulos, Stuart H Orkin, Wendy H Raskind

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
8.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 212 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. GATA1 in Normal and Pathologic Megakaryopoiesis and Platelet Development.Advances in experimental medicine and biology · 2024
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Molecular Basis and Genetic Modifiers of Thalassemia.Hematology/oncology clinics of North America · 2023
    Review
  11. Review
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
  20. Frontiers in genetics · 2021
    Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Channing YuDivision of Hematology/Oncology, Department of Medicine, Children's Hospital, 300 Longwood Avenue, Boston, MA 02115, USA.
Kathy K Niakan
Mark Matsushita
George Stamatoyannopoulos
Stuart H Orkin
Wendy H Raskind
University of Washington Medical Center · USDana-Farber Cancer Institute · USHoward Hughes Medical Institute · US

Funding

CELLULAR MECHANISMS OF HB F REGULATIONR01HL020899 · NHLBI · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 1985 to 2007
$3.6M
MOLECULAR CONTROL OF HUMAN GLOBIN GENE SWITCHINGR01DK045365 · NIDDK · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, GEORGE · 1992 to 2011
$1.6M
NHLBI NIH HHS R01 HL020899NIDDK NIH HHS R01 DK045365
6 · The paper itself

Abstract

Transcription factor GATA-1 is essential for the development of erythroid cells and megakaryocytes. Each of its 2 zinc fingers is critical for normal function. The C-terminal finger is necessary for DNA binding. The N finger mediates interaction with FOG-1, a cofactor for GATA-1, and also modulates DNA-binding affinity, notably at complex or palindromic GATA sites. Residues of the N finger-mediating interaction with FOG-1 lie on the surface of the N finger facing away from DNA. Strong sequence conservation of residues facing DNA suggests that this other surface may also have an important role. We report here that a syndrome of X-linked thrombocytopenia with thalassemia in humans is caused by a missense mutation (Arg216Gln) in the GATA-1 N finger. To investigate the functional consequences of this substitution, we used site-directed mutagenesis to alter the corresponding residue in GATA-1. Compared with wild-type GATA-1, Arg216Gln GATA-1 shows comparable affinity to single GATA sites but decreased affinity to palindromic sites. Arg216Gln GATA-1 interacts with FOG-1 similarly with wild-type GATA-1. Arg216Gln GATA-1 supports erythroid maturation of GATA-1 erythroid cells, albeit at reduced efficiency compared with wild-type GATA-1. Together, these findings suggest that residues of the N finger of GATA-1-facing DNA contribute to GATA-1 function apart from interaction with the cofactor FOG-1. This is also the first example of beta-thalassemia in humans caused by a mutation in an erythroid transcription factor.

Indexed as

Mutation, MissenseX ChromosomeAmino Acid SubstitutionBase SequenceCarrier ProteinsDNADNA-Binding ProteinsErythroid-Specific DNA-Binding FactorsErythropoiesisFamily HealthGATA1 Transcription FactorGenetic LinkageHumansNuclear ProteinsPedigreeProtein BindingCarrier ProteinsDNADNA-Binding ProteinsErythroid-Specific DNA-Binding FactorsGATA1 protein, humanGATA1 Transcription FactorNuclear ProteinsTranscription FactorsZFPM1 protein, human

Identifiers

PMID12200364
PMCPMC2808424
OpenAlexW1978750557

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.