Evidence map›Paper›PMID 12198172›Full record

ArticleThe EMBO journal2002

The scavenger mRNA decapping enzyme DcpS is a member of the HIT family of pyrophosphatases.

Hudan Liu, Nancy D Rodgers, Xinfu Jiao, Megerditch Kiledjian

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 127 papers.

0numbers the graph read from it
0cells of the map it votes in
127citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

127 citing papers in PubMed, 265 citations in OpenAlex.

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  19. Article
  20. Eukaryotic mRNA Decapping Activation.Frontiers in genetics · 2022
    Review

67 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Hudan LiuRutgers University, Department of Cell Biology and Neuroscience, 604 Allison Road, Piscataway, NJ 08854-8082, USA.
Nancy D Rodgers
Xinfu Jiao
Megerditch Kiledjian
Rutgers, The State University of New Jersey · US

Funding

RNA/PROTEIN INTERACTIONS REGULATING MRNA STABILITYR01DK051611 · NIDDK · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI KILEDJIAN, MEGERDITCH · 1997 to 2006
$1.8M
NIDDK NIH HHS DK51611NIDDK NIH HHS R01 DK051611
6 · The paper itself

Abstract

We recently demonstrated that the major decapping activity in mammalian cells involves DcpS, a scavenger pyrophosphatase that hydrolyzes the residual cap structure following 3' to 5' decay of an mRNA. The association of DcpS with 3' to 5' exonuclease exosome components suggests that these two activities are linked and there is a coupled exonucleolytic decay-dependent decapping pathway. We purified DcpS from mammalian cells and identified the cDNA encoding a novel 40 kDa protein possessing DcpS activity. Consistent with purified DcpS, the recombinant protein specifically hydrolyzed methylated cap analog but did not hydrolyze unmethylated cap analog nor did it function on intact capped RNA. Sequence alignments of DcpS from different organisms revealed the presence of a conserved hexapeptide, containing a histidine triad (HIT) sequence with three histidines separated by hydrophobic residues. Mutagenesis analysis revealed that the central histidine within the DcpS HIT motif is critical for decapping activity and defines the HIT motif as a new mRNA decapping domain, making DcpS the first member of the HIT family of proteins with a defined biological function.

Indexed as

Amino Acid MotifsCaenorhabditis elegans ProteinsDNA, ComplementaryDrosophila ProteinsEndoribonucleasesHumansMethylationMolecular WeightMultigene FamilyPyrophosphatasesRecombinant Fusion ProteinsRNA CapsSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe ProteinsSequence AlignmentSequence Homology, Amino AcidCaenorhabditis elegans ProteinsDNA, ComplementaryDrosophila ProteinsEndoribonucleasesmRNA decapping enzymesPyrophosphatasesRecombinant Fusion ProteinsRNA CapsSaccharomyces cerevisiae ProteinsSchizosaccharomyces pombe Proteins

Identifiers

PMID12198172
PMCPMC126188
OpenAlexW2075181140

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.