Evidence map›Paper›PMID 12198162›Full record

ArticleThe EMBO journal2002

Structure and function of the BAH-containing domain of Orc1p in epigenetic silencing.

Zhiguo Zhang, Mariko K Hayashi, Olaf Merkel, Bruce Stillman, Rui-Ming Xu

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 63 papers.

0numbers the graph read from it
0cells of the map it votes in
63citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

63 citing papers in PubMed, 105 citations in OpenAlex.

  1. Compact Origins and Where to Find Them: ORC's Guide to Genome-Wide Licensing.BioEssays : news and reviews in molecular, cellular and developmental biology · 2025
    Review
  2. Review
  3. Article
  4. Article
  5. Histone Readers and Their Roles in Cancer.Cancer treatment and research · 2023
    Article
  6. Origin recognition complex harbors an intrinsic nucleosome remodeling activity.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Pivotal roles of PCNA loading and unloading in heterochromatin function.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  11. Article
  12. Mechanisms and regulation of DNA replication initiation in eukaryotes.Critical reviews in biochemistry and molecular biology · 2017
    Review
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

3 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Zhiguo ZhangCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Mariko K Hayashi
Olaf Merkel
Bruce Stillman
Rui-Ming Xu
Cold Spring Harbor Laboratory · US

Funding

VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI William Richard McCombie · 1985 to 2026
$116.8M
REGULATION OF DNA REPLICATIONR01GM045436 · NIGMS · COLD SPRING HARBOR LABORATORY · PI STILLMAN, BRUCE W. · 1991 to 2025
$15.8M
STRUCTURE STUDIES OF TRANSCRIPTIONAL SILENCINGR01GM063716 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI XU, RUI-MING · 2001 to 2010
$2.9M
NCI NIH HHS CA13106NCI NIH HHS P01 CA013106NIGMS NIH HHS GM45436NIGMS NIH HHS GM 63716NIGMS NIH HHS R01 GM045436NIGMS NIH HHS R01 GM063716
6 · The paper itself

Abstract

The N-terminal domain of the largest subunit of the Saccharomyces cerevisiae origin recognition complex (Orc1p) functions in transcriptional silencing and contains a bromo-adjacent homology (BAH) domain found in some chromatin-associated proteins including Sir3p. The 2.2 A crystal structure of the N-terminal domain of Orc1p revealed a BAH core and a non-conserved helical sub-domain. Mutational analyses demonstrated that the helical sub-domain was necessary and sufficient to bind Sir1p, and critical for targeting Sir1p primarily to the cis-acting E silencers at the HMR and HML silent chromatin domains. In the absence of the BAH domain, approximately 14-20% of cells in a population were silenced at the HML locus. Moreover, the distributions of the Sir2p, Sir3p and Sir4p proteins, while normal, were at levels lower than found in wild-type cells. Thus, in the absence of the Orc1p BAH domain, HML resembled silencing of genes adjacent to telomeres. These data are consistent with the view that the Orc1p-Sir1p interaction at the E silencers ensures stable inheritance of pre-established Sir2p, Sir3p and Sir4p complexes at the silent mating type loci.

Indexed as

Gene Expression Regulation, FungalGene SilencingSilent Information Regulator Proteins, Saccharomyces cerevisiaeAmino Acid SequenceBinding SitesChromatinCrystallography, X-RayDNA-Binding ProteinsHistone DeacetylasesMacromolecular SubstancesModels, MolecularMolecular Sequence DataOrigin Recognition ComplexProtein BindingProtein ConformationProtein Structure, TertiaryChromatinDNA-Binding ProteinsHistone DeacetylasesMacromolecular SubstancesOrigin Recognition ComplexSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR1 protein, S cerevisiaeSIR2 protein, S cerevisiaeSIR3 protein, S cerevisiaeSIR4 protein, S cerevisiaeSirtuin 2SirtuinsTrans-Activators

Identifiers

PMID12198162
PMCPMC125411
OpenAlexW1973600576

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.