Evidence map›Paper›PMID 12198145›Full record

ArticleThe EMBO journal2002

Glycolysis modulates trypanosome glycoprotein expression as revealed by an RNAi library.

James C Morris, Zefeng Wang, Mark E Drew, Paul T Englund

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
10.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 163 citations in OpenAlex.

  1. Article
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  9. The history and conceptual framework of assays and screens.BioEssays : news and reviews in molecular, cellular and developmental biology · 2023
    Article
  10. Frontiers in genetics · 2023
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Forward Genetics in African Trypanosomes.Methods in molecular biology (Clifton, N.J.) · 2020
    Article
  18. Article
  19. Article
  20. Review

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

James C MorrisDepartment of Biological Chemistry, Johns Hopkins Medical School, 725 N. Wolfe Street, Baltimore, MD 21205, USA.
Zefeng Wang
Mark E Drew
Paul T Englund
Johns Hopkins University · US

Funding

Trypansome Surface GlycoproteinsR01AI021334 · NIAID · JOHNS HOPKINS UNIVERSITY · PI ENGLUND, PAUL T · 1985 to 2006
$2.8M
NIAID NIH HHS AI21334NIAID NIH HHS R01 AI021334
6 · The paper itself

Abstract

RNA interference (RNAi) is a powerful tool for identifying gene function in Trypanosoma brucei. We generated an RNAi library, the first of its kind in any organism, by ligation of genomic fragments into the vector pZJMbeta. After transfection at approximately 5-fold genome coverage, trypanosomes were induced to express double-stranded RNA and screened for reduced con canavalin A (conA) binding. Since this lectin binds the surface glycoprotein EP-procyclin, we predicted that cells would lose affinity to conA if RNAi silenced genes affecting EP-procyclin expression or modification. We found a cell line in which RNAi switches expression from glycosylated EP-procyclins to the unglycosylated GPEET-procyclin. This switch results from silencing a hexokinase gene. The relationship between procyclin expression and glycolysis was supported by silencing other genes in the glycolytic pathway, and confirmed by observation of a similar upregulation of GPEET- procyclin when parental cells were grown in medium depleted of glucose. These data suggest that T.brucei 'senses' changes in glucose level and modulates procyclin expression accordingly.

Indexed as

Gene SilencingAnimalsCell-Free SystemCell LineConcanavalin AGene Expression RegulationGene LibraryGenes, ProtozoanGlucoseGlycolysisGlycosylationGlycosylphosphatidylinositolsHexokinaseMembrane GlycoproteinsProtein Processing, Post-TranslationalProtozoan ProteinsConcanavalin AEP procyclin protein, Trypanosoma bruceiGlucoseGlycosylphosphatidylinositolsGPEET protein, Trypanosoma bruceiHexokinaseMembrane GlycoproteinsProtozoan ProteinsPyruvate KinaseRNA, Double-StrandedRNA, ProtozoanRNA, Small InterferingRNA, Untranslated

Identifiers

PMID12198145
PMCPMC125414
OpenAlexW2020308781

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.