Evidence map›Paper›PMID 12192046›Full record

ArticleMolecular and cellular biology2002

Stimulation of 3'-->5' exonuclease and 3'-phosphodiesterase activities of yeast apn2 by proliferating cell nuclear antigen.

Ildiko Unk, Lajos Haracska, Xavier V Gomes, Peter M J Burgers, Louise Prakash, Satya Prakash

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Resolution of a complex crisis at DNA 3' termini.Nature structural & molecular biology · 2019
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. APE2 Zf-GRF facilitates 3'-5' resection of DNA damage following oxidative stress.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. APE2 is required for ATR-Chk1 checkpoint activation in response to oxidative stress.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Ildiko UnkSealy Center for Molecular Science, University of Texas Medical Branch, Galveston 77555-1061, USA.
Lajos Haracska
Xavier V Gomes
Peter M J Burgers
Louise Prakash
Satya Prakash
The University of Texas Medical Branch at Galveston · USWashington University in St. Louis · US

Funding

ENZYMOLOGY OF REPLICATION OF YEAST CHROMOSOMAL DNAR01GM032431 · NIGMS · WASHINGTON UNIVERSITY · PI BURGERS, PETER M · 1985 to 2015
$6.5M
Repair of UV irradiated DNA: excision genes of yeastR37CA041261 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PRAKASH, SATYA · 2002 to 2011
$3.8M
REPAIR OF UV IRRADIATED DNA: EXCISION GENES OF YEASTR01CA041261 · NCI · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PRAKASH, SATYA · 1986 to 2000
$352k
NCI NIH HHS CA41261NCI NIH HHS R01 CA041261NCI NIH HHS R37 CA041261NIGMS NIH HHS GM32431NIGMS NIH HHS R01 GM032431
6 · The paper itself

Abstract

The Apn2 protein of Saccharomyces cerevisiae contains 3'-->5' exonuclease and 3'-phosphodiesterase activities, and these activities function in the repair of DNA strand breaks that have 3'-damaged termini and which are formed in DNA by the action of oxygen-free radicals. Apn2 also has an AP endonuclease activity and functions in the removal of abasic sites from DNA. Here, we provide evidence for the physical and functional interaction of Apn2 with proliferating cell nuclear antigen (PCNA). As indicated by gel filtration and two-hybrid studies, Apn2 interacts with PCNA both in vitro and in vivo and mutations in the consensus PCNA-binding motif of Apn2 abolish this interaction. Importantly, PCNA stimulates the 3'-->5' exonuclease and 3'-phosphodiesterase activities of Apn2. We have examined the involvement of the interdomain connector loop (IDCL) and of the carboxy-terminal domain of PCNA in Apn2 binding and found that Apn2 binds PCNA via distinct domains dependent upon whether the binding is in the absence or presence of DNA. In the absence of DNA, Apn2 binds PCNA through its IDCL domain, whereas in the presence of DNA, when PCNA has been loaded onto the template-primer junction by replication factor C, the C-terminal domain of PCNA mediates the binding.

Indexed as

Saccharomyces cerevisiae ProteinsAmino Acid MotifsAmino Acid SequenceCarbon-Oxygen LyasesChromatography, GelDNADNA-(Apurinic or Apyrimidinic Site) LyaseDNA DamageDNA RepairDose-Response Relationship, DrugHydrolysisMolecular Sequence DataMutationOxygenPlasmidsProliferating Cell Nuclear AntigenAPN2 protein, S cerevisiaeCarbon-Oxygen LyasesDNADNA-(Apurinic or Apyrimidinic Site) LyaseOxygenProliferating Cell Nuclear AntigenSaccharomyces cerevisiae Proteins

Identifiers

PMID12192046
PMCPMC135640
OpenAlexW2126252771

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.