Evidence map›Paper›PMID 12186648›Full record

ArticleGenome biology2002

Identification of Schistosoma mansoni gender-associated gene transcripts by cDNA microarray profiling.

Karl F Hoffmann, David A Johnston, David W Dunne

Abstract readValidation Study
In one paragraph

Article in Genome biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. In Silico Analysis of Common Long Noncoding RNAs inJournal of tropical medicine · 2021
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  15. Review
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  17. Sex-biased expression of microRNAs in Schistosoma mansoni.PLoS neglected tropical diseases · 2013
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Karl F HoffmannDepartment of Pathology, University of Cambridge, Tennis Court Road, Cambridge CB2 1QP, UK. kfh24@cam.ac.uk
David A Johnston
David W Dunne

Funding

Wellcome Trust
6 · The paper itself

Abstract

backgroundParasitic helminths of the genus Schistosoma mate, achieve sexual maturity and produce eggs in the bloodstream of their definitive hosts, and the most important pathological consequences of the infection are associated with this process. We have used cDNA microarray technology to initiate genome-wide gene-expression studies of sex and sexual development in mature Schistosoma mansoni parasites.

resultsAn S. mansoni-specific cDNA microarray was fabricated using 576 expressed sequence tags selected from three cDNA libraries and originating from two different parasite developmental stages. Five independent cDNA microarray hybridizations were analyzed using stringent filtering criteria and careful quality control, leading to the identification of 12 new female-associated and 4 new male-associated gene transcripts in the mature adult schistosome. Statistical analysis of variation demonstrated high levels of agreement within a cDNA microarray (correlation coefficient 0.91; median coefficient of variation 11.1%) and between cDNA microarrays (correlation coefficient 0.90; median coefficient of variation 14.4%). RT-PCR analysis confirmed the cDNA microarray results, thereby supporting the reliability of the system.

conclusionsOur study expands the list of S. mansoni gender-associated gene transcripts from all previous studies by a factor of two. Among the new associations identified, a tyrosinase ortholog was preferentially expressed in the adult female, and a dynein light-chain ortholog was highly induced in the adult male. cDNA microarrays offer the potential for exponential leaps in the understanding of parasite biology and this study shows how molecules involved in sexual biology can be rapidly identified.

Indexed as

Sex CharacteristicsAnimalsDNA, ComplementaryDNA, HelminthFemaleGene Expression ProfilingGene Expression RegulationGenes, HelminthMaleOligonucleotide Array Sequence AnalysisPolymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionSchistosoma mansoniTranscription, GeneticDNA, ComplementaryDNA, Helminth

Identifiers

PMID12186648
PMCPMC126235

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.