ArticleProceedings. Biological sciences2002
Going nuclear: gene family evolution and vertebrate phylogeny reconciled.
Article in Proceedings. Biological sciences, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.
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Who cites it
28 citing papers in PubMed.
- Insights into avian molecular cytogenetics-with reptilian comparisons.Molecular cytogenetics · 2024Review
- Dinosaurs: Comparative Cytogenomics of Their Reptile Cousins and Avian Descendants.Animals : an open access journal from MDPI · 2022Review
- Exact median-tree inference for unrooted reconciliation costs.BMC evolutionary biology · 2020Article
- Assessing parallel gene histories in viral genomes.BMC evolutionary biology · 2016Article
- Refining discordant gene trees.BMC bioinformatics · 2014Article
- Combining distance matrices on identical taxon sets for multi-gene analysis with singular value decomposition.PloS one · 2014Article
- Using genes as characters and a parsimony analysis to explore the phylogenetic position of turtles.PloS one · 2013Article
- Turning the crown upside down: gene tree parsimony roots the eukaryotic tree of life.Systematic biology · 2012Article
- Efficient error correction algorithms for gene tree reconciliation based on duplication, duplication and loss, and deep coalescence.BMC bioinformatics · 2012Article
- Best practices for justifying fossil calibrations.Systematic biology · 2012Article
- Genome-wide comparative analysis of phylogenetic trees: the prokaryotic forest of life.Methods in molecular biology (Clifton, N.J.) · 2012Article
- Efficiency of nuclear and mitochondrial markers recovering and supporting known amniote groups.Evolutionary bioinformatics online · 2012Article
- Article
- Genome-scale phylogenetics: inferring the plant tree of life from 18,896 gene trees.Systematic biology · 2011Article
- Maximum likelihood models and algorithms for gene tree evolution with duplications and losses.BMC bioinformatics · 2011Article
- An ILP solution for the gene duplication problem.BMC bioinformatics · 2011Article
- Duplicate dmbx1 genes regulate progenitor cell cycle and differentiation during zebrafish midbrain and retinal development.BMC developmental biology · 2010Article
- Neogastropod phylogenetic relationships based on entire mitochondrial genomes.BMC evolutionary biology · 2009Article
- Inferring angiosperm phylogeny from EST data with widespread gene duplication.BMC evolutionary biology · 2007Article
- Higher-order phylogeny of modern birds (Theropoda, Aves: Neornithes) based on comparative anatomy. II. Analysis and discussion.Zoological journal of the Linnean Society · 2007Article
Corrections and comments
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Authors and funding
2 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Gene duplications have been common throughout vertebrate evolution, introducing paralogy and so complicating phylogenetic inference from nuclear genes. Reconciled trees are one method capable of dealing with paralogy, using the relationship between a gene phylogeny and the phylogeny of the organisms containing those genes to identify gene duplication events. This allows us to infer phylogenies from gene families containing both orthologous and paralogous copies. Vertebrate phylogeny is well understood from morphological and palaeontological data, but studies using mitochondrial sequence data have failed to reproduce this classical view. Reconciled tree analysis of a database of 118 vertebrate gene families supports a largely classical vertebrate phylogeny.
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