ArticlePlant physiology2002
Using genomic resources to guide research directions. The arabinogalactan protein gene family as a test case.
Article in Plant physiology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 109 papers.
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Who cites it
109 citing papers in PubMed, 225 citations in OpenAlex.
- Arabinogalactan Proteins in Pollen-Pistil Interactions: Molecular Regulators of Reproductive Barriers and Compatibility.International journal of molecular sciences · 2026Review
- Article
- Genome-wide identification and analysis of the FLA gene family in maize (Zea mays L.) and its expression in response to abiotic stresses.BMC plant biology · 2025Article
- Determining the Role of OsAGP6P in Anther Development Within the Arabinogalactan Peptide Family of Rice (International journal of molecular sciences · 2025Article
- Differential prolyl hydroxylation by six Physcomitrella prolyl-4 hydroxylases.Computational and structural biotechnology journal · 2024Article
- Molecular evolution of Phytocyanin gene and analysis of expression at different coloring periods in apple (Malus domestica).BMC plant biology · 2024Article
- Review: structure and modifications of arabinogalactan proteins (AGPs).BMC plant biology · 2023Review
- Genome-Wide Comparative Analysis of the Fasciclin-like Arabinogalactan Proteins (FLAs) inInternational journal of molecular sciences · 2023Article
- Identification of loci controlling timing of stem elongation in red clover using genotyping by sequencing of pooled phenotypic extremes.Molecular genetics and genomics : MGG · 2022Article
- Different responses of banana classical AGP genes and cell wall AGP components to low-temperature between chilling sensitive and tolerant cultivars.Plant cell reports · 2022Article
- Arabinogalactan Proteins: Focus on the Role in Cellulose Synthesis and Deposition during Plant Cell Wall Biogenesis.International journal of molecular sciences · 2022Review
- Plant-microbe interactions in the apoplast: Communication at the plant cell wall.The Plant cell · 2022Article
- Article
- New insights on the expression patterns of specific Arabinogalactan proteins in reproductive tissues ofFrontiers in plant science · 2022Article
- Global transcriptome dissection of pollen-pistil interactions induced self-incompatibility in dragon fruit (PeerJ · 2022Article
- A targeted bioinformatics approach identifies highly variable cell surface proteins that are unique to Glomeromycotina.Mycorrhiza · 2022Article
- Comprehensive Analysis of Arabinogalactan Protein-Encoding Genes Reveals the Involvement of ThreeInternational journal of molecular sciences · 2021Article
- FLA14 is required for pollen development and preventing premature pollen germination under high humidity in Arabidopsis.BMC plant biology · 2021Article
- Arabinogalactan glycoprotein dynamics during the progamic phase in the tomato pistil.Plant reproduction · 2021Article
- Dynamics of cell wall structure and related genomic resources for drought tolerance in rice.Plant cell reports · 2021Review
49 more citing papers are in PubMed but not listed here.
Corrections and comments
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Arabinogalactan proteins (AGPs) are extracellular hydroxyproline-rich proteoglycans implicated in plant growth and development. The protein backbones of AGPs are rich in proline/hydroxyproline, serine, alanine, and threonine. Most family members have less than 40% similarity; therefore, finding family members using Basic Local Alignment Search Tool searches is difficult. As part of our systematic analysis of AGP function in Arabidopsis, we wanted to make sure that we had identified most of the members of the gene family. We used the biased amino acid composition of AGPs to identify AGPs and arabinogalactan (AG) peptides in the Arabidopsis genome. Different criteria were used to identify the fasciclin-like AGPs. In total, we have identified 13 classical AGPs, 10 AG-peptides, three basic AGPs that include a short lysine-rich region, and 21 fasciclin-like AGPs. To streamline the analysis of genomic resources to assist in the planning of targeted experimental approaches, we have adopted a flow chart to maximize the information that can be obtained about each gene. One of the key steps is the reformatting of the Arabidopsis Functional Genomics Consortium microarray data. This customized software program makes it possible to view the ratio data for all Arabidopsis Functional Genomics Consortium experiments and as many genes as desired in a single spreadsheet. The results for reciprocal experiments are grouped to simplify analysis and candidate AGPs involved in development or biotic and abiotic stress responses are readily identified. The microarray data support the suggestion that different AGPs have different functions.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.