Evidence map›Paper›PMID 12172009›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

High-resolution mapping of the 11q13 amplicon and identification of a gene, TAOS1, that is amplified and overexpressed in oral cancer cells.

Xin Huang, Susanne M Gollin, Siva Raja, Tony E Godfrey

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 186 citations in OpenAlex.

  1. Trial
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  7. Three sesquiterpene lactones suppress lung adenocarcinoma by blocking TMEM16A-mediated CaThe Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology · 2023
    Article
  8. Cytosolic iron-sulfur protein assembly system identifies clients by a C-terminal tripeptide.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  10. Review
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  12. Journal of personalized medicine · 2023
    Article
  13. Article
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  15. Review
  16. Role of ANO1 in tumors and tumor immunity.Journal of cancer research and clinical oncology · 2022
    Review
  17. Article
  18. Review
  19. Article
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Xin HuangDepartment of Human Genetics, University of Pittsburgh Graduate School of Public Health, Pittsburgh, PA 15261, USA.
Susanne M Gollin
Siva Raja
Tony E Godfrey
UPMC Hillman Cancer Center · US

Funding

TNF FAMILY LIGANDS AND ORAL CARCINOMAP60DE013059 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MYERS, EUGENE N · 1999 to 2003
$9.7M
GENETIC ANALYSIS OF CHROMOSOME 9P21 IN ORAL CARCINOMAR01DE012008 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI GOLLIN, SUSANNE M · 1997 to 2000
$350k
NIDCR NIH HHS P60 DE013059NIDCR NIH HHS P60DE13059NIDCR NIH HHS R01DE12008
6 · The paper itself

Abstract

Amplification of chromosomal band 11q13 is a common event in human cancer. It has been reported in about 45% of head and neck carcinomas and in other cancers including esophageal, breast, liver, lung, and bladder cancer. To understand the mechanism of 11q13 amplification and to identify the potential oncogene(s) driving it, we have fine-mapped the structure of the amplicon in oral squamous cell carcinoma cell lines and localized the proximal and distal breakpoints. A 5-Mb physical map of the region has been prepared from which sequence is available. We quantified copy number of sequence-tagged site markers at 42-550 kb intervals along the length of the amplicon and defined the amplicon core and breakpoints by using TaqMan-based quantitative microsatellite analysis. The core of the amplicon maps to a 1.5-Mb region. The proximal breakpoint localizes to two intervals between sequence-tagged site markers, 550 kb and 160 kb in size, and the distal breakpoint maps to a 250 kb interval. The cyclin D1 gene maps to the amplicon core, as do two new expressed sequence tag clusters. We have analyzed one of these expressed sequence tag clusters and now report that it contains a previously uncharacterized gene, TAOS1 (tumor amplified and overexpressed sequence 1), which is both amplified and overexpressed in oral cancer cells. The data suggest that TAOS1 may be an amplification-dependent candidate oncogene with a role in the development and/or progression of human tumors, including oral squamous cell carcinomas. The approach described here should be useful for characterizing amplified genomic regions in a wide variety of tumors.

Indexed as

Chromosomes, Human, Pair 11Amino Acid SequenceBase SequenceChromosome MappingDNA PrimersGene AmplificationGene Expression Regulation, NeoplasticGenetic MarkersHumansMolecular Sequence DataMouth NeoplasmsNeoplasm ProteinsSensitivity and SpecificityDNA PrimersGenetic MarkersLTO1 protein, humanNeoplasm Proteins

Identifiers

PMID12172009
PMCPMC123263
OpenAlexW2070968409

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.