Evidence map›Paper›PMID 12165855›Full record

ArticleOncogene2002

Changes in WT1 splicing are associated with a specific gene expression profile in Wilms' tumour.

Dominique Baudry, Marine Faussillon, Marie-Odile Cabanis, Muriel Rigolet, Jean-Michel Zucker, Catherine Patte, Sabine Sarnacki, Liliane Boccon-Gibod, Claudine Junien, Cécile Jeanpierre

Abstract readComparative Study
PubMed Publisher
In one paragraph

Article in Oncogene, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. GCOD - GeneChip Oncology Database.BMC bioinformatics · 2011
    Article
  9. Article
  10. Article
  11. Emerging roles of BRCA1 alternative splicing.Molecular pathology : MP · 2003
    Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Dominique BaudryINSERM U383, Hôpital Necker-Enfants Malades, Université René Descartes, 75743 Paris Cedex 15, France.
Marine Faussillon
Marie-Odile Cabanis
Muriel Rigolet
Jean-Michel Zucker
Catherine Patte
Sabine Sarnacki
Liliane Boccon-Gibod
Claudine Junien
Cécile Jeanpierre
Hôpital Necker-Enfants Malades · FRInserm · FRCentre National de la Recherche Scientifique · FRHôpital Armand-Trousseau · FRInstitut Curie · FRInstitut Gustave Roussy · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wilms' tumour (WT) or nephroblastoma is the most frequent kidney cancer in children. In a previous study, we reported alterations to WT1 transcription in 90% of WT tested, with decreased exon 5 +/- isoform ratio being the most frequent alteration (56% of WT). We now report an approach based on cDNA profiling of tumour pools to identify genes likely to be dysregulated in association with a decreased WT1 exon 5 +/- ratio. We compared the expression profiles of pools of tumours classified according to whether this isoform imbalance was present (five tumours) or not (four tumours), using Atlas Cancer cDNA expression arrays. Fourteen of 588 genes tested displayed specific up-regulation (CCND2, PCNA, N-MYC, E2F3, TOP2A, PAK1, DCC and PCDH2) or down-regulation (VEGF, IGFBP5, TIMP3, ARHB, C-FOS and CD9) in the pool of tumours with decreased exon 5 +/- ratio. These results were validated by RT-PCR analysis of four genes (CCND2, PCNA, VEGF and IGFBP5). We extended the analysis of VEGF expression to 51 tumours by real-time RT-PCR and ascertained differential expression of this gene associated with WT1 expression pattern. Moreover, our results suggest that the VEGF expression level may be of prognosis relevance for relapsed patients.

Indexed as

Alternative SplicingDNA PrimersDown-RegulationExonsGene Expression Regulation, NeoplasticHumansKidneyKidney NeoplasmsNeoplasm ProteinsOligonucleotide Array Sequence AnalysisPrognosisProtein IsoformsReverse Transcriptase Polymerase Chain ReactionUp-RegulationWilms TumorWT1 ProteinsDNA PrimersNeoplasm ProteinsProtein IsoformsWT1 Proteins

Identifiers

PMID12165855
OpenAlexW2028201755

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.