Evidence map›Paper›PMID 12163647›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

Proteomic survey of metabolic pathways in rice.

Antonius Koller, Michael P Washburn, B Markus Lange, Nancy L Andon, Cosmin Deciu, Paul A Haynes, Lara Hays, David Schieltz, Ryan Ulaszek, Jing Wei and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
26.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 407 citations in OpenAlex.

  1. Review
  2. Review
  3. Integrating physiological and multi-omics methods to elucidate heat stress tolerance for sustainable rice production.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Proteomic analysis of 2-chloroethanol extracts of rice (Food chemistry. Molecular sciences · 2020
    Article
  14. Proteomic landscape of human coronary artery atherosclerosis.International journal of molecular medicine · 2020
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Antonius KollerProtein and Metabolite Dynamics Department, Torrey Mesa Research Institute, 3115 Merryfield Row, San Diego, CA 92121, USA. antonius.koller@syngenta.com
Michael P Washburn
B Markus Lange
Nancy L Andon
Cosmin Deciu
Paul A Haynes
Lara Hays
David Schieltz
Ryan Ulaszek
Jing Wei
Dirk Wolters
John R Yates
Torrey Pines Institute For Molecular Studies · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A systematic proteomic analysis of rice (Oryza sativa) leaf, root, and seed tissue using two independent technologies, two-dimensional gel electrophoresis followed by tandem mass spectrometry and multidimensional protein identification technology, allowed the detection and identification of 2,528 unique proteins, which represents the most comprehensive proteome exploration to date. A comparative display of the expression patterns indicated that enzymes involved in central metabolic pathways are present in all tissues, whereas metabolic specialization is reflected in the occurrence of a tissue-specific enzyme complement. For example, tissue-specific and subcellular compartment-specific isoforms of ADP-glucose pyrophosphorylase were detected, thus providing proteomic confirmation of the presence of distinct regulatory mechanisms involved in the biosynthesis and breakdown of separate starch pools in different tissues. In addition, several previously characterized allergenic proteins were identified in the seed sample, indicating the potential of proteomic approaches to survey food samples with regard to the occurrence of allergens.

Indexed as

ProteomeAmino Acid SequenceChromatography, High Pressure LiquidElectrophoresis, Gel, Two-DimensionalMass SpectrometryMolecular Sequence DataOryzaPlant ProteinsSequence Homology, Amino AcidPlant ProteinsProteome

Identifiers

PMID12163647
PMCPMC129378
OpenAlexW2031818334

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.