Evidence map›Paper›PMID 12163607›Full record

ArticleJournal of virology2002

Stabilization of the soluble, cleaved, trimeric form of the envelope glycoprotein complex of human immunodeficiency virus type 1.

Rogier W Sanders, Mika Vesanen, Norbert Schuelke, Aditi Master, Linnea Schiffner, Roopa Kalyanaraman, Maciej Paluch, Ben Berkhout, Paul J Maddon, William C Olson and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 329 papers.

0numbers the graph read from it
0cells of the map it votes in
329citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

329 citing papers in PubMed, 449 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Under the Radar: Immune Evasion, Pathogenesis and Control of HIV Infection.International journal of molecular sciences · 2025
    Review
  10. Antibody feedback establishes an affinity brake in the germinal center.bioRxiv : the preprint server for biology · 2025
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

269 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Rogier W SandersDepartment of Microbiology and Immunology, Weill Medical College, Cornell University, New York, New York 10021, USA.
Mika Vesanen
Norbert Schuelke
Aditi Master
Linnea Schiffner
Roopa Kalyanaraman
Maciej Paluch
Ben Berkhout
Paul J Maddon
William C Olson
Min Lu
John P Moore
Progenics Pharmaceuticals (United States) · USAcademic Medical Center · NLCornell University · USUniversity of Amsterdam · NL

Funding

MODIFIED ENVELOPE GLYCOPROTEINS FOR HIV1 VACCINER01AI045463 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOORE, JOHN P · 1999 to 2010
$4.2M
HIV Vaccine Design and Development TeamR01AI049764 · NIAID · PROGENICS PHARMACEUTICALS, INC. · PI MADDON, PAUL J · 2000 to 2001
$4.1M
STRUCTURE AND FUNCTION OF THE HIV-1 ENVELOPE PROTEINR01AI042382 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI LU, MIN · 1999 to 2008
$3.1M
TOPOLOGICAL ANALYSIS OF HIV-1 ENVELOPE GLYCOPROTEINSR01AI039420 · NIAID · DANA-FARBER CANCER INSTITUTE · PI SODROSKI, JOSEPH G · 1996 to 2004
$1.6M
Structure & Function of the HIV-1 Envelope ProteinR56AI042382 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI LU, MIN · 2010 to 2010
$390k
STRUCTURE/FUNCTION OF THE HIV1 ENVELOPE PROTEINR21AI042382 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI LU, MIN · 1998 to 1998
–
NIAID NIH HHS AI39420NIAID NIH HHS AI42382NIAID NIH HHS AI45463NIAID NIH HHS AI49764NIAID NIH HHS R01 AI039420NIAID NIH HHS R01 AI042382NIAID NIH HHS R01 AI045463NIAID NIH HHS R56 AI042382
6 · The paper itself

Abstract

The envelope glycoprotein (Env) complex of human immunodeficiency virus type 1 has evolved a structure that is minimally immunogenic while retaining its natural function of receptor-mediated virus-cell fusion. The Env complex is trimeric; its six individual subunits (three gp120 and three gp41 subunits) are associated by relatively weak, noncovalent interactions. The induction of neutralizing antibodies after vaccination with individual Env subunits has proven very difficult, probably because they are inadequate mimics of the native complex. Our hypothesis is that a stable form of the Env complex, perhaps with additional modifications to rationally alter its antigenic structure, may be a better immunogen than the individual subunits. A soluble form of Env, SOS gp140, can be made that has gp120 stably linked to the gp41 ectodomain by an intermolecular disulfide bond. This protein is fully cleaved at the proteolysis site between gp120 and gp41. However, the gp41-gp41 interactions in SOS gp140 are too weak to maintain the protein in a trimeric configuration. Consequently, purified SOS gp140 is a monomer (N. Schülke, M. S. Vesanen, R. W. Sanders, P. Zhu, D. J. Anselma, A. R. Villa, P. W. H. I. Parren, J. M. Binley, K. H. Roux, P. J. Maddon, J. P. Moore, and W. C. Olson, J. Virol. 76:7760-7776, 2002). Here we describe modifications of SOS gp140 that increase its trimer stability. A variant SOS gp140, designated SOSIP gp140, contains an isoleucine-to-proline substitution at position 559 in the N-terminal heptad repeat region of gp41. This protein is fully cleaved, has favorable antigenic properties, and is predominantly trimeric. SOSIP gp140 trimers are noncovalently associated and can be partially purified by gel filtration chromatography. These gp140 trimers are dissociated into monomers by anionic detergents or heat but are relatively resistant to nonionic detergents, high salt concentrations, or exposure to a mildly acidic pH. SOSIP gp140 should be a useful reagent for structural and immunogenicity studies.

Indexed as

Amino Acid SequenceAmino Acid SubstitutionCell LineDimerizationDisulfidesenv Gene Products, Human Immunodeficiency VirusGene Products, envHIV-1HIV Envelope Protein gp120HIV Envelope Protein gp41HumansSolubilityDisulfidesenv Gene Products, Human Immunodeficiency VirusGene Products, envgp140 envelope protein, Human immunodeficiency virus 1HIV Envelope Protein gp120HIV Envelope Protein gp41

Identifiers

PMID12163607
PMCPMC136973
OpenAlexW1968360645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.