Evidence map›Paper›PMID 12163582›Full record

ArticleJournal of virology2002

Alphavirus minus-strand RNA synthesis: identification of a role for Arg183 of the nsP4 polymerase.

Cori L Fata, Stanley G Sawicki, Dorothea L Sawicki

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Cori L FataDepartment of Microbiology and Immunology, Medical College of Ohio, Toledo, Ohio 43614, USA.
Stanley G Sawicki
Dorothea L Sawicki
University of Toledo Medical Center · US

Funding

REGULATION OF ALPHAVIRUS TRANSCRIPTIONR01AI015123 · NIAID · UNIVERSITY OF TOLEDO HEALTH SCI CAMPUS · PI SAWICKI, DOROTHEA L · 1986 to 2000
$274k
REGULATION OF ALPHAVIRUS TRANSCRIPTIONR22AI015123 · NIAID · UNIVERSITY OF TOLEDO HEALTH SCI CAMPUS · PI SAWICKI, DOROTHEA L · 1985 to 1985
–
NIAID NIH HHS AI-15123
6 · The paper itself

Abstract

A partially conserved region spanning amino acids 142 to 191 of the Sindbis virus (SIN) nsP4 core polymerase is implicated in host restriction, elongation, and promoter recognition. We extended the analysis of this region by substituting Ser, Ala, or Lys for a highly conserved Arg183 residue immediately preceding its absolutely conserved Ser184-Ala-Val-Pro-Ser188 sequence. In chicken cells, the nsP4 Arg183 mutants had a nonconditionally lethal, temperature-sensitive (ts) growth phenotype caused by a ts defect in minus-strand synthesis whose extent varied with the particular amino acid substituted (Ser>Ala>Lys). Plus-strand synthesis by nsP4 Arg183 mutant polymerases was unaffected when corrected for minus-strand numbers, although 26S mRNA synthesis was enhanced at the elevated temperature compared to wild type. The ts defect was not due to a failure to form or accumulate nsP4 at 40 degrees C. In contrast to their growth in chicken cells, the nsP4 Arg183 mutants replicated equally poorly, if at all, in mosquito cells. We conclude that Arg183 within the Pro180-Asn-Ile-Arg-Ser184 sequence of the SIN nsP4 polymerase contributes to the efficient initiation of minus strands or the formation of its replicase and that a host factor(s) participates in this event.

Indexed as

AedesAmino Acid SequenceAmino Acid SubstitutionAnimalsArginineCell LineChick EmbryoDNA-Directed RNA PolymerasesGene Expression Regulation, ViralMolecular Sequence DataPhenotypeRecombination, GeneticRNA, ViralSindbis VirusTemperatureViral Nonstructural ProteinsArginineDNA-Directed RNA PolymerasesRNA, ViralViral Nonstructural Proteins

Identifiers

PMID12163582
PMCPMC136981
OpenAlexW2135437246

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.