Evidence map›Paper›PMID 12142402›Full record

ArticleJournal of bacteriology2002

The N-acetyltransferase RimJ responds to environmental stimuli to repress pap fimbrial transcription in Escherichia coli.

Christine A White-Ziegler, Alia M Black, Stacie H Eliades, Sarah Young, Kimberly Porter

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
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  11. A Thermosensitive, Phase-Variable Epigenetic Switch:Microbiology and molecular biology reviews : MMBR · 2020
    Review
  12. Article
  13. Review
  14. Article
  15. Review
  16. Programmed heterogeneity: epigenetic mechanisms in bacteria.The Journal of biological chemistry · 2013
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Christine A White-ZieglerDepartment of Biological Sciences, Smith College, Northampton, Massachusetts 01063, USA. cwhitezi@science.smith.edu.
Alia M Black
Stacie H Eliades
Sarah Young
Kimberly Porter
Smith College · US

Funding

Rim J and thermoregulation of pili transcriptionR15GM062792 · NIGMS · SMITH COLLEGE · PI WHITE-ZIEGLER, CHRISTINE A · 2001 to 2001
$135k
NIGMS NIH HHS GM62792NIGMS NIH HHS R15 GM062792
6 · The paper itself

Abstract

In uropathogenic Escherichia coli, P pili (Pap) facilitate binding to host epithelial cells and subsequent colonization. Whereas P pili can be produced at 37 degrees C, the expression of these fimbriae is suppressed at 23 degrees C. Previously, insertion mutations in rimJ, a gene encoding the N-terminal acetyltransferase of ribosomal protein S5, were shown to disrupt this thermoregulatory response, allowing papBA transcription at low temperature. In this study, we created an in-frame deletion of rimJ. This deletion relieved the repressive effects not only of low temperature but also of rich (Luria-Bertani [LB]) medium and glucose on papBA transcription, indicating that RimJ modulates papBA transcription in response to multiple environmental stimuli. papI transcription was also shown to be regulated by RimJ. papBA transcription is also controlled by a phase variation mechanism. We demonstrated that the regulators necessary to establish a phase ON state--PapI, PapB, Dam, Lrp, and cyclic AMP-CAP-are still required for papBA transcription in a rimJ mutant strain. rimJ mutations increase the rate at which bacteria transition into the phase ON state, indicating that RimJ inhibits the phase OFF-->ON transition. A DeltarimJ hns651 mutant is viable on LB medium but not on minimal medium. This synthetic lethality, along with transcriptional analyses, indicates that RimJ and H-NS work through separate pathways to control papBA transcription. Mutations in rimJ do not greatly influence the transcription of the fan, daa, or fim operon, suggesting that RimJ may be a pap-specific regulator. Overexpression of rimJ under conditions repressive for papBA transcription complements the DeltarimJ mutation but has little effect on transcription under activating conditions, indicating that the ability of RimJ to regulate transcription is environmentally controlled.

Indexed as

AcetyltransferasesEscherichia coli ProteinsFimbriae ProteinsMembrane ProteinsRepressor ProteinsArylamine N-AcetyltransferaseBacterial ProteinsBody Temperature RegulationCyclic AMPDNA-Binding ProteinsEnvironmentEscherichia coliFimbriae, BacterialGene DeletionGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicAcetyltransferasesArylamine N-AcetyltransferaseAtpA protein, E coliatpD protein, E coliBacterial ProteinsCyclic AMPDaaA protein, E coliDam methyltransferasedam protein, E coliDNA-Binding ProteinsEscherichia coli ProteinsFanA protein, E coliFimbriae ProteinsfimbrillinH-NS protein, bacteriaLeucine-Responsive Regulatory ProteinLrp protein, E coliMembrane ProteinsPapI protein, E coliReceptors, Cyclic AMPRepressor ProteinsRibosomal ProteinsRimJ protein, E coliSite-Specific DNA-Methyltransferase (Adenine-Specific)Transcription Factors

Identifiers

PMID12142402
PMCPMC135235
OpenAlexW1965943918

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.