Evidence map›Paper›PMID 12138192›Full record

ArticleMolecular and cellular biology2002

The zinc finger domain of NEMO is selectively required for NF-kappa B activation by UV radiation and topoisomerase inhibitors.

Tony T Huang, Shelby L Feinberg, Sainath Suryanarayanan, Shigeki Miyamoto

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 107 citations in OpenAlex.

  1. Article
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  3. All-atom molecular dynamics comparison of disease-associated zinc fingers.Journal of biomolecular structure & dynamics · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Tony T HuangProgram in Molecular and Cellular Pharmacology, Department of Pharmacology, University of Wisconsin-Madison, Madison, Wisconsin 53706-1532, USA.
Shelby L Feinberg
Sainath Suryanarayanan
Shigeki Miyamoto
University of Wisconsin–Madison · US

Funding

Regulation of NEMO modifications in radiation-induced NF-kB signalingR01CA077474 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI MIYAMOTO, SHIGEKI · 2000 to 2014
$4.0M
MECHANISMS OF CONSTITUTIVE NF KB ACTIVITYR01CA081065 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI MIYAMOTO, SHIGEKI · 1999 to 2007
$2.5M
NCI NIH HHS R01 CA077474NCI NIH HHS R01 CA081065NCI NIH HHS R01-CA77474NCI NIH HHS R01-CA81065
6 · The paper itself

Abstract

Exposure of mammalian cells to UV radiation was proposed to stimulate the transcription factor NF-kappa B by a unique mechanism. Typically, rapid and strong inducers of NF-kappa B, such as tumor necrosis factor alpha (TNF-alpha) and bacterial lipopolysaccharide (LPS), lead to rapid phosphorylation and proteasomal degradation of its inhibitory protein, I kappa B alpha. In contrast, UV, a relatively slower and weaker inducer of NF-kappa B, was suggested not to require phosphorylation of I kappa B alpha for its targeted degradation by the proteasome. We now provide evidence to account for this peculiar degradation process of I kappa B alpha. The phospho-I kappa B alpha generated by UV is only detectable by expressing a Delta F-box mutant of the ubiquitin ligase beta-TrCP, which serves as a specific substrate trap for serine 32 and 36 phosphorylated I kappa B alpha. In agreement with this finding, we also find that the I kappa B kinase (IKK) phospho-acceptor sites on I kappa B alpha, core components of the IKK signalsome, and IKK catalytic activity are all required for UV signaling. Furthermore, deletion and point mutation analyses reveal that both the amino-terminal IKK-binding and the carboxy-terminal putative zinc finger domains of NEMO (IKK gamma) are critical for UV-induced NF-kappa B activation. Interestingly, the zinc finger domain is also required for NF-kappa B activation by two other slow and weak inducers, camptothecin and etoposide. In contrast, the zinc finger module is largely dispensable for NF-kappa B activation by the rapid and strong inducers LPS and TNF-alpha. Thus, we suggest that the zinc finger domain of NEMO likely represents a point of convergence for signaling pathways initiated by slow and weak NF-kappa B-activating conditions.

Indexed as

I-kappa B ProteinsNitrilesOrganic ChemicalsSulfonesUltraviolet RaysAnimalsAntineoplastic Agentsbeta-Transducin Repeat-Containing ProteinsCarrier ProteinsCells, CulturedDNA-Binding ProteinsDNA TopoisomerasesFibroblastsGenes, ReporterGTP-Binding ProteinsHumans3-(4-methylphenylsulfonyl)-2-propenenitrileAntineoplastic Agentsbeta-Transducin Repeat-Containing ProteinsBTRC protein, humanBtrc protein, mouseCarrier ProteinsCHUK protein, humanChuk protein, mouseDNA-Binding ProteinsDNA TopoisomerasesGTP-Binding ProteinsI-kappa B KinaseI-kappa B ProteinsIKBKB protein, humanIkbkb protein, mouseIKBKE protein, humanIkbke protein, mouseLipopolysaccharidesNF-kappa BNF-KappaB Inhibitor alphaNFKBIA protein, humanNfkbia protein, mouseNitrilesOrganic ChemicalsPhosphoproteinsProtein Serine-Threonine KinasesSulfonesTopoisomerase InhibitorsTumor Necrosis Factor-alpha

Identifiers

PMID12138192
PMCPMC133970
OpenAlexW2133275098

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.