Evidence map›Paper›PMID 12137562›Full record

ArticleThe Biochemical journal2002

JFC1 is transcriptionally activated by nuclear factor-kappaB and up-regulated by tumour necrosis factor alpha in prostate carcinoma cells.

Sergio D Catz, Bernard M Babior, Jennifer L Johnson

Open access · bronzeAbstract read
In one paragraph

Article in The Biochemical journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sergio D CatzBiochemistry Division, Department of Molecular and Experimental Medicine, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, CA 92037, USA.
Bernard M Babior
Jennifer L Johnson
Scripps Research Institute · US

Funding

THE FUNCTION OF NORMAL AND MALIGNANT PHAGOCYTESR01AI024227 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI CATZ, SERGIO DANIEL · 1985 to 2007
$4.0M
OXIDASE-RELATED 48K PHOSPHOPROTEIN OF HUMAN NEUTROPHILSR01AI028479 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI DEUEL, THOMAS F · 1989 to 2004
$2.0M
P56C2, A NOVEL C2 DOMAIN PROTEIN OF LEUKOCYTESR01AI044434 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI BABIOR, BERNARD M · 1999 to 2003
$1.4M
FUNCTION OF NORMAL AND MALIGNANT PHAGOCYTESR37AI024227 · NIAID · SCRIPPS RESEARCH INSTITUTE · PI BABIOR, BERNARD M · 1988 to 1997
–
NIAID NIH HHS AI-24227NIAID NIH HHS AI-28479NIAID NIH HHS AI-44434
6 · The paper itself

Abstract

The human promoter region of JFC1, a phosphatidylinositol 3,4,5-trisphosphate binding ATPase, was isolated by amplification of a 549 bp region upstream of the jfc1 gene by the use of a double-PCR system. By primer extension analysis we mapped the transcription initiation site at nucleotide -321 relative to the translation start site. Putative regulatory elements were identified in the jfc1 TATA-less promoter, including three consensus sites for nuclear factor-kappaB (NF-kappaB). We analysed the three putative NF-kappaB binding sites by gel retardation and supershift assays. Each of the putative NF-kappaB sites interacted specifically with recombinant NF-kappaB p50, and the complexes co-migrated with those formed by the NF-kappaB consensus sequence and p50. An antibody to p50 generated a supershifted complex for these NF-kappaB sites. These sites formed specific complexes with nuclear proteins from tumour necrosis factor alpha (TNFalpha)-treated WEHI 231 cells, which were supershifted with antibodies against p50 and p65. The jfc1 promoter was transcriptionally active in various cell lines, as determined by luciferase reporter assays following transfection with a jfc1 promoter luciferase vector. Co-transfection with NF-kappaB expression vectors or stimulation with TNFalpha resulted in significant transactivation of the jfc1 promoter construct, although transactivation of a mutated jfc1 promoter was negligible. The expression of a dominant negative IkappaB (inhibitor kappaB) decreased basal jfc1 promoter activity. The cell lines PC-3, LNCaP and DU-145, but not Epstein-Barr virus-transformed lymphocytes, showed a dramatic increase in the expression of JFC1 after treatment with TNFalpha, suggesting that transcriptional activation of JFC1 by the TNFalpha/NF-kappaB pathway is significant in prostate carcinoma cell lines.

Indexed as

Base SequenceBlotting, WesternCloning, MolecularDNAHumansMaleMembrane ProteinsMolecular Sequence DataNF-kappa BPromoter Regions, GeneticProstatic NeoplasmsRecombinant ProteinsTranscriptional ActivationTumor Cells, CulturedTumor Necrosis Factor-alphaUp-RegulationDNAMembrane ProteinsNF-kappa BRecombinant ProteinsSYTL1 protein, humanTumor Necrosis Factor-alpha

Identifiers

PMID12137562
PMCPMC1222920
OpenAlexW2067981751

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.