Evidence map›Paper›PMID 12136096›Full record

ArticleNucleic acids research2002

Regulation of riboflavin biosynthesis and transport genes in bacteria by transcriptional and translational attenuation.

Alexey G Vitreschak, Dmitry A Rodionov, Andrey A Mironov, Mikhail S Gelfand

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 155 papers.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed, 320 citations in OpenAlex.

  1. Review
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  13. Riboflavin- and Dextran-ProducingFoods (Basel, Switzerland) · 2024
    Article
  14. TheRNA (New York, N.Y.) · 2024
    Article
  15. Article
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95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Alexey G VitreschakInstitute for Problems of Information Transmission, Moscow, 101447, Russia.
Dmitry A Rodionov
Andrey A Mironov
Mikhail S Gelfand
Institute for Information Transmission Problems · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The riboflavin biosynthesis in bacteria was analyzed using comparative analysis of genes, operons and regulatory elements. A model for regulation based on formation of alternative RNA structures involving the RFN elements is suggested. In Gram-positive bacteria including actinomycetes, Thermotoga, Thermus and Deinococcus, the riboflavin metabolism and transport genes are predicted to be regulated by transcriptional attenuation, whereas in most Gram-negative bacteria, the riboflavin biosynthesis genes seem to be regulated on the level of translation initiation. Several new candidate riboflavin transporters were identified (impX in Desulfitobacterium halfniense and Fusobacterium nucleatum; pnuX in several actinomycetes, including some Corynebacterium species and Strepto myces coelicolor; rfnT in Rhizobiaceae). Traces of a number of likely horizontal transfer events were found: the complete riboflavin operon with the upstream regulatory element was transferred to Haemophilus influenzae and Actinobacillus pleuropneumoniae from some Gram-positive bacterium; non-regulated riboflavin operon in Pyrococcus furiousus was likely transferred from Thermotoga; and the RFN element was inserted into the riboflavin operon of Pseudomonas aeruginosa from some other Pseudomonas species, where it had regulated the ribH2 gene.

Indexed as

Gene Expression Regulation, BacterialBacteriaBase SequenceBiological TransportGenes, BacterialGenome, BacterialMolecular Sequence DataMultienzyme ComplexesNucleic Acid ConformationOperonPhylogenyProtein BiosynthesisRegulatory Sequences, Nucleic AcidRiboflavinRiboflavin SynthaseRNA, Bacterial6,7-dimethyl-8-ribityllumazine synthaseMultienzyme ComplexesRiboflavinRiboflavin SynthaseRNA, Bacterial

Identifiers

PMID12136096
PMCPMC135753
OpenAlexW2125460607

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.