Evidence map›Paper›PMID 12136085›Full record

ArticleNucleic acids research2002

Functional interaction between TATA and upstream CACGTG elements regulates the temporally specific expression of Otx mRNAs during early embryogenesis of the sea urchin, Hemicentrotus pulcherrimus.

Akiko Kobayashi, Koji Akasaka, Masashi Kawaichi, Tetsuro Kokubo

Abstract read
In one paragraph

Article in Nucleic acids research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Akiko KobayashiDivision of Gene Function in Animals, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara 630-0101, Japan.
Koji Akasaka
Masashi Kawaichi
Tetsuro Kokubo

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The orthodenticle-related protein (HpOtx) gene derived from the sea urchin Hemicentrotus pulcherrimus encodes two distinct isoforms, HpOtxE and HpOtxL, which are differentially expressed during early embryogenesis and are driven by TATA-less and TATA-containing promoters, respectively. In order to determine if the TATA element is involved in the establishment of the temporally specific expression profile of the HpOtx gene, reporter genes under the control of modified or wild-type HpOtxE/L promoters were introduced into fertilized eggs. When the activities of the different promoter constructs were examined, we found that deletion of the TATA element from the HpOtxL promoter causes early expression, whereas addition of the TATA element to the HpOtxE promoter causes delayed expression. This suppressive action of the TATA element on transcription from the HpOtxE/L promoters requires the presence of upstream CACGTG elements. These results indicate that the presence or absence of the TATA element determines, at least in part, the expression profile of the HpOtxE/L promoters, in concert with the transcription factor(s) that binds to the upstream CACGTG element. Immunoblot and gel retardation analyses suggest that functional interaction between CACGTG binding factor(s) and TATA factor(s) may be regulated by an unidentified third factor(s) during early embryogenesis in the sea urchin.

Indexed as

Amino Acid SequenceAnimalsBase SequenceDNA-Binding ProteinsDNA, ComplementaryElectrophoretic Mobility Shift AssayEmbryo, NonmammalianGene Expression Regulation, DevelopmentalHomeodomain ProteinsLuciferasesMolecular Sequence DataOtx Transcription FactorsPromoter Regions, GeneticProtein BindingRecombinant Fusion ProteinsRegulatory Sequences, Nucleic AcidDNA-Binding ProteinsDNA, ComplementaryHomeodomain ProteinsLuciferasesOtx Transcription FactorsRecombinant Fusion ProteinsRNA, MessengerTATA-Box Binding ProteinTranscription FactorsUpstream Stimulatory Factors

Identifiers

PMID12136085
PMCPMC135759

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.