Evidence map›Paper›PMID 12125770›Full record

ArticleAnnals of botany2002

Fluorescence in situ hybridization analysis of alien genes in Agrobacterium-mediated Cry1A(b)-transformed rice.

Wei-Wei Jin, Zong-Yun Li, Qing Fang, Illimar Altosaar, Li-Hua Liu, Yun-Chun Song

Abstract read
In one paragraph

Article in Annals of botany, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Wei-Wei JinKey Lab of MOE for Plant Developmental Biology, Wuhan University, PR China.
Zong-Yun Li
Qing Fang
Illimar Altosaar
Li-Hua Liu
Yun-Chun Song

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The transgene in Agrobacterium-mediated Cry1A(b)-transgenic rice plants has been detected and its chromosomal location determined by fluorescence in situ hybridization (FISH). Eight of the nine transgenic lines tested showed hybridization signals. Signals were located on regions of the chromosome in which fraction length (FL) values varied from 26.2 (near the centromere) to 95.2 (distal regions). No signal was found on regions where the fraction length was less than 26.2, while six of the nine signals detected were located on regions with FL values of 75.3 or over. This demonstrates that Agrobacterium-mediated genes can integrate into multiple sites distributed in different parts of the chromosome, but that distal regions are the preferred sites and regions near the centromeres are colder for T-DNA integration. The donor DNA of the transformation was divided into two parts, labelled separately as probes for two-colour FISH. Results show that the transformed DNA sequences remained linked in the recipient genome. The relationship between integration position and transgene silencing, known as the 'position effect', is discussed.

Indexed as

Drosophila ProteinsEye ProteinsGenes, BacterialPhotoreceptor Cells, InvertebrateTransformation, GeneticCryptochromesDNA ProbesFlavoproteinsIn Situ Hybridization, FluorescenceOryzaReceptors, G-Protein-CoupledRNA, Messengercry protein, DrosophilaCryptochromesDNA ProbesDrosophila ProteinsEye ProteinsFlavoproteinsReceptors, G-Protein-CoupledRNA, Messenger

Identifiers

PMID12125770
PMCPMC4233863

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.