Evidence map›Paper›PMID 12124292›Full record

ArticleBiophysical journal2002

Role of Asp193 in chromophore-protein interaction of pharaonis phoborhodopsin (sensory rhodopsin II).

Masayuki Iwamoto, Yuji Furutani, Yuki Sudo, Kazumi Shimono, Hideki Kandori, Naoki Kamo

Abstract read
In one paragraph

Article in Biophysical journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Masayuki IwamotoLaboratory of Biophysical Chemistry, Graduate School of Pharmaceutical Sciences, Hokkaido University, Sapporo 060-0812, Japan.
Yuji Furutani
Yuki Sudo
Kazumi Shimono
Hideki Kandori
Naoki Kamo

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pharaonis phoborhodopsin (ppR; also pharaonis sensory rhodopsin II, psRII) is a receptor of the negative phototaxis of Natronobacterium pharaonis. By spectroscopic titration of D193N and D193E mutants, the pK(a) of the Schiff base was evaluated. Asp193 corresponds to Glu204 of bacteriorhodopsin (bR). The pK(a) of the Schiff base (SBH(+)) of D193N was approximately 10.1-10.0 (at XH(+)) and approximately 11.4-11.6 (at X) depending on the protonation state of a certain residue (designated by X) and independent of Cl(-), whereas those of the wild type and D193E were >12. The pK(a) values of XH(+) were approximately 11.8-11.2 at the state of SB, 10.5 at SBH(+) state in the presence of Cl(-), and 9.6 at SBH(+) without Cl(-). These imply the presence of a long-range interaction in the extracellular channel. Asp193 was suggested to be deprotonated in the present dodecyl-maltoside (DDM) solubilized wild-type ppR, which is contrary to Glu204 of bR. In the absence of salts, the irreversible denaturation of D193N (but not the wild type and D193E) occurred via a metastable state, into which the addition of Cl(-) reversed the intact pigment. This suggests that the negative charge at residue 193, which can be substituted by Cl(-), is necessary to maintain the proper conformation in the DDM-solubilized ppR.

Indexed as

HalorhodopsinsSensory RhodopsinsAnionsArchaeal ProteinsAspartic AcidBacteriorhodopsinsCarotenoidsChlorineHistidineHydrogen-Ion ConcentrationMutagenesis, Site-DirectedPhotochemistryProtein BindingProtein ConformationSchiff BasesSpectrophotometryAnionsArchaeal ProteinsAspartic AcidBacteriorhodopsinsCarotenoidsChlorineHalorhodopsinsHistidineSchiff Basessensory rhodopsin II protein, archaealSensory Rhodopsins

Identifiers

PMID12124292
PMCPMC1302214

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.