Evidence map›Paper›PMID 12124273›Full record

ArticleBiophysical journal2002

Energetic localization of saxitoxin in its channel binding site.

Gaurav Choudhary, Lisa Shang, Xiufeng Li, Samuel C Dudley

Open access · bronzeAbstract read
In one paragraph

Article in Biophysical journal, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 36 citations in OpenAlex.

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  11. Review
  12. De novo synthesis of modified saxitoxins for sodium ion channel study.Journal of the American Chemical Society · 2009
    Article
  13. A stereoselective synthesis of (+)-gonyautoxin 3.Journal of the American Chemical Society · 2008
    Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Gaurav ChoudharyDepartment of Medicine, Emory University and Atlanta Veterans Administration Medical Center, Atlanta, Georgia 30322 USA.
Lisa Shang
Xiufeng Li
Samuel C Dudley
Emory University · US

Funding

EVALUATION OF THE NA+ CHANNEL OUTER VESTIBULER01HL064828 · NHLBI · EMORY UNIVERSITY · PI DUDLEY, SAMUEL C · 2000 to 2004
$811k
NHLBI NIH HHS HL64828
6 · The paper itself

Abstract

Saxitoxin (STX) selectively blocks the voltage-gated sodium channel at the outer vestibule lined by P-loops of the four domains. Neosaxitoxin has an additional -OH group at the N1 position of the 1,2,3 guanidinium (N1-OH) that interacts with domains I and IV of the Na(+) channel. Determination of a second toxin interaction with the channel would fix the location of STX. Gonyautoxin 2,3 and Gonyautoxin 1,4 are C-11 sulfated derivatives of saxitoxin and neosaxitoxin, respectively. We used these variants to constrain the STX docking orientation by energetically localizing the C-11 sulfate in the outer vestibule. Interactions between the C-11 sulfate and each of the four domains of the channel were determined by a systematic approach to mutant cycle analysis in which all known carboxyl groups important for site 1 toxin binding were neutralized, allowing energetic triangulation of the toxin sulfate and overcoming some limitations of mutant cycles. Toxin IC(50)s were measured by two-electrode voltage clamp from Xenopus oocytes injected with the channel mRNA. Three unique types of analysis based on the coupling results localized the C-11 sulfate between domains III and IV. Combined with our previous report, the data establish the orientation of STX in the outer vestibule and confirm the clockwise arrangement of the channel domains.

Indexed as

AnimalsBinding SitesBiophysical PhenomenaBiophysicsElectrophysiologyInhibitory Concentration 50Models, MolecularMutationOocytesProtein BindingProtein ConformationProtein Structure, TertiaryRNA, MessengerSaxitoxinSodium ChannelsXenopusgonyautoxinsRNA, MessengerSaxitoxinSodium Channels

Identifiers

PMID12124273
PMCPMC1302195
OpenAlexW2150731866

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.