Evidence map›Paper›PMID 12123528›Full record

ArticleBMC plant biology2002

High frequency of phenotypic deviations in Physcomitrella patens plants transformed with a gene-disruption library.

Tanja Egener, José Granado, Marie-Christine Guitton, Annette Hohe, Hauke Holtorf, Jan M Lucht, Stefan A Rensing, Katja Schlink, Julia Schulte, Gabriele Schween and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
11.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 97 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Differential prolyl hydroxylation by six Physcomitrella prolyl-4 hydroxylases.Computational and structural biotechnology journal · 2024
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  10. The advent of plant cells in bioreactors.Frontiers in plant science · 2023
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  13. Stomata and Sporophytes of the Model MossFrontiers in plant science · 2020
    Article
  14. Review
  15. Article
  16. Microscopy ofPlant methods · 2017
    Article
  17. Article
  18. Article
  19. Moss-made pharmaceuticals: from bench to bedside.Plant biotechnology journal · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Tanja EgenerPlant Biotechnology, Freiburg University, Sonnenstrasse 5, D-79104 Freiburg/Br, Germany. tanja.egener@biologie.uni-freiburg.de
José Granado
Marie-Christine Guitton
Annette Hohe
Hauke Holtorf
Jan M Lucht
Stefan A Rensing
Katja Schlink
Julia Schulte
Gabriele Schween
Susanne Zimmermann
Elke Duwenig
Bodo Rak
Ralf Reski
University of Freiburg · DEBASF (Germany) · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe moss Physcomitrella patens is an attractive model system for plant biology and functional genome analysis. It shares many biological features with higher plants but has the unique advantage of an efficient homologous recombination system for its nuclear DNA. This allows precise genetic manipulations and targeted knockouts to study gene function, an approach that due to the very low frequency of targeted recombination events is not routinely possible in any higher plant.

resultsAs an important prerequisite for a large-scale gene/function correlation study in this plant, we are establishing a collection of Physcomitrella patens transformants with insertion mutations in most expressed genes. A low-redundancy moss cDNA library was mutagenised in E. coli using a derivative of the transposon Tn1000. The resulting gene-disruption library was then used to transform Physcomitrella. Homologous recombination of the mutagenised cDNA with genomic coding sequences is expected to target insertion events preferentially to expressed genes. An immediate phenotypic analysis of transformants is made possible by the predominance of the haploid gametophytic state in the life cycle of the moss. Among the first 16,203 transformants analysed so far, we observed 2636 plants (= 16.2%) that differed from the wild-type in a variety of developmental, morphological and physiological characteristics.

conclusionsThe high proportion of phenotypic deviations and the wide range of abnormalities observed among the transformants suggests that mutagenesis by gene-disruption library transformation is a useful strategy to establish a highly diverse population of Physcomitrella patens mutants for functional genome analysis.

Indexed as

Gene LibraryBryopsidaDNA, ComplementaryDNA Transposable ElementsGenome, PlantMutagenesisMutagenesis, InsertionalMutationPhenotypePlants, Genetically ModifiedRecombination, GeneticTransformation, GeneticDNA, ComplementaryDNA Transposable Elements

Identifiers

PMID12123528
PMCPMC117800
OpenAlexW1783499490

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.