Evidence map›Paper›PMID 12121902›Full record

ArticleAntimicrobial agents and chemotherapy2002

Tn5406, a new staphylococcal transposon conferring resistance to streptogramin a and related compounds including dalfopristin.

Julien Haroche, Jeanine Allignet, Névine El Solh

Abstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Vancomycin Resistance inMicroorganisms · 2022
    Review
  3. Molecular Mechanisms of Drug Resistance inInternational journal of molecular sciences · 2022
    Review
  4. Article
  5. TnAntimicrobial agents and chemotherapy · 2019
    Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Article
  11. Resistance Genes Underlying the LSAntimicrobial agents and chemotherapy · 2013
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Emergence of pristinamycin resistance in India.Indian journal of pharmacology · 2009
    Article
  19. DNA microarray for detection of macrolide resistance genes.Antimicrobial agents and chemotherapy · 2006
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Julien HarocheStaphylococci Unit, Institut Pasteur, 25/28 Rue du Doctor Roux, 75724 Paris Cedex 15, France.
Jeanine Allignet
Névine El Solh

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We characterized a new transposon, Tn5406 (5,467 bp), in a clinical isolate of Staphylococcus aureus (BM3327). It carries a variant of vgaA, which encodes a putative ABC protein conferring resistance to streptogramin A but not to mixtures of streptogramins A and B. It also carries three putative genes, the products of which exhibit significant similarities (61 to 73% amino acid identity) to the three transposases of the staphylococcal transposon Tn554. Like Tn554, Tn5406 failed to generate target repeats. In BM3327, the single copy of Tn5406 was inserted into the chromosomal att554 site, which is the preferential insertion site of Tn554. In three other independent S. aureus clinical isolates, Tn5406 was either present as a single plasmid copy (BM3318), as two chromosomal copies (BM3252), or both in the chromosome and on a plasmid (BM3385). The Tn5406-carrying plasmids also contain two other genes, vgaB and vatB. The insertion sites of Tn5406 in BM3252 were studied: one copy was in att554, and one copy was in the additional SCCmec element. Amplification experiments revealed circular forms of Tn5406, indicating that this transposon might be active. To our knowledge, a transposon conferring resistance to streptogramin A and related compounds has not been previously described.

Indexed as

Anti-Bacterial AgentsChromosomes, BacterialCloning, MolecularCulture MediaDNA, BacterialDNA Transposable ElementsGenes, BacterialMicrobial Sensitivity TestsMolecular Sequence DataPlasmidsReverse Transcriptase Polymerase Chain ReactionStaphylococcus aureusStreptogramin AVirginiamycinAnti-Bacterial AgentsCulture MediadalfopristinDNA, BacterialDNA Transposable ElementsStreptogramin AVirginiamycin

Identifiers

PMID12121902
PMCPMC127375

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.