Evidence map›Paper›PMID 12121673›Full record

ArticleHuman immunology2002

The HLA class I A locus affects susceptibility to type 1 diabetes.

Janelle A Noble, Ana M Valdes, Teodorica L Bugawan, Raymond J Apple, Glenys Thomson, Henry A Erlich

Open access · greenAbstract read
In one paragraph

Article in Human immunology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed, 1 pooled it
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 1 synthesis or guideline pooled it, 129 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Observational
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Circulating β cell-specific CD8Clinical and experimental immunology · 2020
    Article
  17. Article
  18. Article
  19. Genetics of type 1 diabetes.Pediatric diabetes · 2018
    Review
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Janelle A NobleChildren's Hospital, Oakland Research Institute, Oakland, CA 94609, USA. jnoble@chori.org
Ana M Valdes
Teodorica L Bugawan
Raymond J Apple
Glenys Thomson
Henry A Erlich
GeneTrace Systems (United States) · USGenomics (United Kingdom) · GBOakland University · USUniversity of California, Berkeley · US

Funding

The genetic basis of type 1 diabetes autoimmunity in African AmericansR01DK061722 · NIDDK · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI NOBLE, JANELLE A · 2003 to 2013
$3.5M
SEARCH FOR THE IDDM GENES WITHIN THE HLA REGIONR01DK046626 · NIDDK · ROCHE MOLECULAR SYSTEMS, INC. · PI ERLICH, HENRY A · 1993 to 1996
–
SMALL INSTRUMENTATION PROGRAMS15AI029049 · NIAID · COLORADO STATE UNIVERSITY-FORT COLLINS · PI BEATY, BARRY J · 1989 to 1989
–
NIAID NIH HHS AI29049NIDDK NIH HHS DK 46626NIDDK NIH HHS R01 DK061722
6 · The paper itself

Abstract

Human leukocyte antigen A (HLA-A) genotypes were determined for samples from 283 multiplex, Caucasian, type 1 diabetes families from the Human Biological Data Interchange (HBDI) using an immobilized probe assay. Distribution of HLA-A alleles transmitted to patients was significantly different from that in affected family-based controls (AFBAC) (p = 0.004). Transmission disequilibrium test (TDT) analysis revealed differential transmission of several HLA-A alleles from parents to affected offspring. HLA class II DRB1 and DQB1 loci were also typed, allowing assignment of HLA-A alleles to haplotypes and calculation of linkage disequilibrium values. Some of the apparent effects of HLA-A alleles on type 1 diabetes susceptibility were attributable to linkage disequilibrium with DR and DQ alleles, although others were not. The differences in frequencies between patients and controls of alleles A*0101, A*2402, and A*3002 could not be explained by linkage disequilibrium alone. Our results suggest an important role for class I antigens in modulating susceptibility to type 1 diabetes.

Indexed as

Genes, MHC Class IAllelesDiabetes Mellitus, Type 1FemaleGene FrequencyGenes, MHC Class IIHLA-A AntigensHLA-DQ AntigensHLA-DQ beta-ChainsHLA-DR AntigensHLA-DRB1 ChainsHumansLinkage DisequilibriumMaleHLA-A AntigensHLA-DQ AntigensHLA-DQB1 antigenHLA-DQ beta-ChainsHLA-DR AntigensHLA-DRB1 Chains

Identifiers

PMID12121673
PMCPMC4049513
OpenAlexW1966931486

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.