Evidence map›Paper›PMID 12119380›Full record

ArticleThe Plant cell2002

The Arabidopsis SKU5 gene encodes an extracellular glycosyl phosphatidylinositol-anchored glycoprotein involved in directional root growth.

John C Sedbrook, Kathleen L Carroll, Kai F Hung, Patrick H Masson, Chris R Somerville

Open access · greenAbstract readComparative Study
In one paragraph

Article in The Plant cell, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers.

0numbers the graph read from it
0cells of the map it votes in
116citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

116 citing papers in PubMed, 244 citations in OpenAlex.

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56 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

John C SedbrookCarnegie Institution, 260 Panama Street, Stanford, California 94305, USA. sedbrook@andrew2.stanford.edu
Kathleen L Carroll
Kai F Hung
Patrick H Masson
Chris R Somerville
University of Wisconsin–Madison · USCarnegie Institution for Science · US

Funding

Action of Anbolic Factors on Bone Formation in MiceR01AG021189 · NIA · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HURLEY, MARJA MARIE · 2004 to 2013
$2.5M
PECTIN ESTERASE IN ARABIDOPSISF32GM020181 · NIGMS · CARNEGIE INSTITUTION OF WASHINGTON, D.C. · PI SEDBROOK, JOHN C · 1999 to 2001
$80k
NIA NIH HHS R01 AG021189NIGMS NIH HHS 1 F32 GM20181NIGMS NIH HHS F32 GM020181
6 · The paper itself

Abstract

To investigate how roots respond to directional cues, we characterized a T-DNA-tagged Arabidopsis mutant named sku5 in which the roots skewed and looped away from the normal downward direction of growth on inclined agar surfaces. sku5 roots and etiolated hypocotyls were slightly shorter than normal and exhibited a counterclockwise (left-handed) axial rotation bias. The surface-dependent skewing phenotype disappeared when the roots penetrated the agar surface, but the axial rotation defect persisted, revealing that these two directional growth processes are separable. The SKU5 gene belongs to a 19-member gene family designated SKS (SKU5 Similar) that is related structurally to the multiple-copper oxidases ascorbate oxidase and laccase. However, the SKS proteins lack several of the conserved copper binding motifs characteristic of copper oxidases, and no enzymatic function could be assigned to the SKU5 protein. Analysis of plants expressing SKU5 reporter constructs and protein gel blot analysis showed that SKU5 was expressed most strongly in expanding tissues. SKU5 was glycosylated and modified by glycosyl phosphatidylinositol and localized to both the plasma membrane and the cell wall. Our observations suggest that SKU5 affects two directional growth processes, possibly by participating in cell wall expansion.

Indexed as

ArabidopsisArabidopsis ProteinsCell MembraneCell WallCloning, MolecularDNA, ComplementaryGene Expression Regulation, PlantGlycosylphosphatidylinositolsGreen Fluorescent ProteinsLuminescent ProteinsMembrane GlycoproteinsMicroscopy, ConfocalMolecular Sequence DataOxidoreductasesPhenotypePlant RootsArabidopsis Proteinscopper oxidaseDNA, ComplementaryGlycosylphosphatidylinositolsGreen Fluorescent ProteinsLuminescent ProteinsMembrane GlycoproteinsOxidoreductasesRecombinant Fusion ProteinsSKU5 protein, ArabidopsisNASA Discipline Plant BiologyNon-NASA Center

Identifiers

PMID12119380
PMCPMC150712
OpenAlexW2038594751

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.