Evidence map›Paper›PMID 12119377›Full record

ArticleThe Plant cell2002

Missense mutation in the PAS2 domain of phytochrome A impairs subnuclear localization and a subset of responses.

Marcelo J Yanovsky, Juan Pablo Luppi, Daniel Kirchbauer, Ouliana B Ogorodnikova, Vitally A Sineshchekov, Eva Adam, Stefan Kircher, Roberto J Staneloni, Eberhard Schäfer, Ferenc Nagy and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
14.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Bell-like homeodomain selectively regulates the high-irradiance response of phytochrome A.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  12. Article
  13. Article
  14. Article
  15. Phytochrome-mediated light signaling in plants: emerging trends.Physiology and molecular biology of plants : an international journal of functional plant biology · 2008
    Article
  16. Blue Rhythms Between GIGANTEA and Phytochromes.Plant signaling & behavior · 2007
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 4 countries.

Marcelo J YanovskyIFEVA, Facultad de Agronomía, Universidad de Buenos Aires, Av San Martín 4453, 1417-Buenos Aires, Argentina.
Juan Pablo Luppi
Daniel Kirchbauer
Ouliana B Ogorodnikova
Vitally A Sineshchekov
Eva Adam
Stefan Kircher
Roberto J Staneloni
Eberhard Schäfer
Ferenc Nagy
Jorge J Casal
University of Freiburg · DEAgricultural Plant Physiology and Ecology Research Institute · ARLomonosov Moscow State University · RUFundación Instituto Leloir · ARHUN-REN Szegedi Biológiai Kutatóközpont · HUInstitute of Plant Biology · HUUniversity of Buenos Aires · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phytochrome A signaling shows two photobiologically discrete outputs: so-called very-low-fluence responses (VLFR) and high-irradiance responses (HIR). By modifying previous screening protocols, we isolated two Arabidopsis mutants retaining VLFR and lacking HIR. Phytochrome A negatively or positively regulates phytochrome B signaling, depending on light conditions. These mutants retained the negative but lacked the positive regulation. Both mutants carry the novel phyA-302 allele, in which Glu-777 (a residue conserved in angiosperm phytochromes) changed to Lys in the PAS2 motif of the C-terminal domain. The phyA-302 mutants showed a 50% reduction in phytochrome A levels in darkness, but this difference was compensated for by greater stability under continuous far-red light. phyA-302:green fluorescent protein fusion proteins showed normal translocation from the cytosol to the nucleus under continuous far-red light but failed to produce nuclear spots, suggesting that nuclear speckles could be involved in HIR signaling and phytochrome A degradation. We propose that the PAS2 domain of phytochrome A is necessary to initiate signaling in HIR but not in VLFR, likely via interaction with a specific partner.

Indexed as

Photoreceptor CellsTranscription FactorsAllelesAnthocyaninsArabidopsisArabidopsis ProteinsBinding SitesBiological TransportConserved SequenceDarknessGenetic Complementation TestGerminationGreen Fluorescent ProteinsHypocotylLightLuminescent ProteinsAnthocyaninsArabidopsis ProteinsGreen Fluorescent ProteinsLuminescent ProteinsNuclear ProteinsNucleocytoplasmic Transport ProteinsPHYA protein, ArabidopsisPHYB protein, ArabidopsisPhytochromePhytochrome APhytochrome BRecombinant Fusion ProteinsTranscription Factors

Identifiers

PMID12119377
PMCPMC150709
OpenAlexW2153577507

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.