Evidence map›Paper›PMID 12117929›Full record

ArticleInfection and immunity2002

Yersiniabactin production requires the thioesterase domain of HMWP2 and YbtD, a putative phosphopantetheinylate transferase.

Alexander G Bobrov, Valerie A Geoffroy, Robert D Perry

Open access · greenAbstract read
In one paragraph

Article in Infection and immunity, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Alexander G BobrovDepartment of Microbiology, Immunology, and Molecular Genetics, University of Kentucky, Lexington 40536-0084, USA.
Valerie A Geoffroy
Robert D Perry
University of Kentucky · US

Funding

Siderophore Synthetases in Three Bacterial PathogensR01AI042738 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WALSH, CHRISTOPHER T · 1998 to 2011
$5.0M
Yersiniabactin and plague pathogenesisR01AI033481 · NIAID · UNIVERSITY OF KENTUCKY · PI PERRY, ROBERT DONALD · 1993 to 2013
$3.6M
Yersiniabactin and plague pathogenesisR56AI033481 · NIAID · UNIVERSITY OF KENTUCKY · PI PERRY, ROBERT DONALD · 2008 to 2008
$366k
NIAID NIH HHS AI33481NIAID NIH HHS R01 AI033481NIAID NIH HHS R01 AI042738NIAID NIH HHS R56 AI033481
6 · The paper itself

Abstract

One requirement for the pathogenesis of Yersinia pestis, the causative agent of bubonic plague, is the yersiniabactin (Ybt) siderophore-dependent iron transport system that is encoded within a high-pathogenicity island (HPI) within the pgm locus of the Y. pestis chromosome. Nine gene products within the HPI have demonstrated functions in the nonribosomal peptide synthesis (NRPS)/polyketide (PK) synthesis or transport of Ybt. NRPS/PK synthetase or synthase enzymes are generally activated by phosphopantetheinylation. However, no products with similarities to known phosphopantetheinyl (P-pant) transferases were found within the pgm locus. We have identified a gene, ybtD, encoded outside the HPI and pgm locus, that is necessary for function of the Ybt system and has similarities to other P-pant transferases such as EntD of Escherichia coli. A deletion within ybtD yielded a strain (KIM6-2085+) defective in siderophore production. This strain was unable to grow on iron-deficient media at 37 degrees C but could be cross-fed by culture supernatants from Ybt-producing strains of Y. pestis. The promoter region of ybtD was fused to lacZ; beta-galactosidase expression from this reporter was not regulated by the iron status of the bacterial cells or by YbtA, a positive regulator of other genes of the ybt system. The ybtD mutant failed to express indicator Ybt proteins (high-molecular-weight protein 1 [HMWP1], HMWP2, and Psn), a pattern similar to those seen with several other ybt biosynthetic mutants. In contrast, cells containing a single amino acid substitution (S2908A) in the terminal thioesterase domain of HMWP2 failed to exhibit any ybt regulatory defects but did not elaborate extracellular Ybt under iron-deficient conditions.

Indexed as

PhenolsThiazolesAmino Acid SequenceAmino Acid SubstitutionBacterial Outer Membrane ProteinsBacterial ProteinsBase SequenceDNA, BacterialGene ExpressionIron-Binding ProteinsIron-Regulatory ProteinsIron-Sulfur ProteinsMolecular Sequence DataMutagenesisOperonPeriplasmic Binding ProteinsBacterial Outer Membrane ProteinsBacterial ProteinsDNA, BacterialIron-Binding ProteinsIron-Regulatory ProteinsIron-Sulfur ProteinsPeriplasmic Binding ProteinsPhenolsRNA-Binding ProteinsSiderophoresThiazolesTransferases (Other Substituted Phosphate Groups)YbtD protein, Yersinia pestisyersiniabactin

Identifiers

PMID12117929
PMCPMC128149
OpenAlexW2152838104

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.