Evidence map›Paper›PMID 12114544›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

Endo-beta-N-acetylglucosaminidase, an enzyme involved in processing of free oligosaccharides in the cytosol.

Tadashi Suzuki, Keiichi Yano, Seiji Sugimoto, Ken Kitajima, William J Lennarz, Sadako Inoue, Yasuo Inoue, Yasufumi Emori

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 147 citations in OpenAlex.

  1. Review
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  6. Review
  7. Genomic diversity and ecological distribution of marineMarine life science & technology · 2023
    Article
  8. Article
  9. Comparative proteomics reveals elevated CCN2 in NGLY1-deficient cells.Biochemical and biophysical research communications · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. N-Glycosylation.Advances in experimental medicine and biology · 2021
    Article
  15. Article
  16. Article
  17. Cytosolic N-GlcNAc proteins are formed by the action of endo-β-N-acetylglucosaminidase.Biochemical and biophysical research communications · 2020
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Tadashi SuzukiUndergraduate Program for Bioinformatics and Systems Biology and Department of Biophysics and Biochemistry, Graduate School of Science, University of Tokyo, Hongo 7-3-1, Bunkyo-ku, Tokyo 113-0033, Japan.
Keiichi Yano
Seiji Sugimoto
Ken Kitajima
William J Lennarz
Sadako Inoue
Yasuo Inoue
Yasufumi Emori
The University of Tokyo · JP

Funding

LIPID CARRIERS IN MEMBRANE GLYCOPROTEIN SYNTHESISR01GM033184 · NIGMS · UNIVERSITY OF TEXAS MD ANDERSON CAN CTR · PI LENNARZ, WILLIAM J · 1985 to 2010
$3.2M
NIGMS NIH HHS GM33184NIGMS NIH HHS R01 GM033184
6 · The paper itself

Abstract

Formation of oligosaccharides occurs both in the cytosol and in the lumen of the endoplasmic reticulum (ER). Luminal oligosaccharides are transported into the cytosol to ensure that they do not interfere with proper functioning of the glycan-dependent quality control machinery in the lumen of the ER for newly synthesized glycoproteins. Once in the cytosol, free oligosaccharides are catabolized, possibly to maximize the reutilization of the component sugars. An endo-beta-N-acetylglucosaminidase (ENGase) is a key enzyme involved in the processing of free oligosaccharides in the cytosol. This enzyme activity has been widely described in animal cells, but the gene encoding this enzyme activity has not been reported. Here, we report the identification of the gene encoding human cytosolic ENGase. After 11 steps, the enzyme was purified 150,000-fold to homogeneity from hen oviduct, and several internal amino acid sequences were analyzed. Based on the internal sequence and examination of expressed sequence tag (EST) databases, we identified the human orthologue of the purified protein. The human protein consists of 743 aa and has no apparent signal sequence, supporting the idea that this enzyme is localized in the cytosol. By expressing the cDNA of the putative human ENGase in COS-7 cells, the enzyme activity in the soluble fraction was enhanced 100-fold over the basal level, confirming that the human gene identified indeed encodes for ENGase. Careful gene database surveys revealed the occurrence of ENGase homologues in Drosophila melanogaster, Caenorhabditis elegans, and Arabidopsis thaliana, indicating the broad occurrence of ENGase in higher eukaryotes. This gene was expressed in a variety of human tissues, suggesting that this enzyme is involved in basic biological processes in eukaryotic cells.

Indexed as

Amino Acid SequenceAnimalsArabidopsisChickensChlorocebus aethiopsCOS CellsCytosolDrosophilaFemaleHumansMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidaseMolecular Sequence DataOligosaccharidesOrgan SpecificityOviductsPeptide MappingMannosyl-Glycoprotein Endo-beta-N-AcetylglucosaminidaseOligosaccharidesRecombinant Proteins

Identifiers

PMID12114544
PMCPMC124980
OpenAlexW2072100650

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.