Evidence map›Paper›PMID 12107121›Full record

ArticleJournal of bacteriology2002

Importance of different tfd genes for degradation of chloroaromatics by Ralstonia eutropha JMP134.

Iris Plumeier, Danilo Pérez-Pantoja, Sabina Heim, Bernardo González, Dietmar H Pieper

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 50 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Iris PlumeierDepartment of Environmental Biotechnology, GBF-German Research Center for Biotechnology, D-38124 Braunschweig, Germany.
Danilo Pérez-Pantoja
Sabina Heim
Bernardo González
Dietmar H Pieper
German Center for Infection Research · DEPontificia Universidad Católica de Chile · CL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The tfdC(I)D(I)E(I)F(I,) and tfdD(II)C(II)E(II)F(II) gene modules of plasmid pJP4 of Ralstonia eutropha JMP134 encode complete sets of functional enzymes for the transformation of chlorocatechols into 3-oxoadipate, which are all expressed during growth on 2,4-dichlorophenoxyacetate (2,4-D). However, activity of tfd(I)-encoded enzymes was usually higher than that of tfd(II)-encoded enzymes, both in the wild-type strain grown on 2,4-D and in 3-chlorobenzoate-grown derivatives harboring only one tfd gene module. The tfdD(II)-encoded chloromuconate cycloisomerase exhibited special kinetic properties, with high activity against 3-chloromuconate and poor activity against 2-chloromuconate and unsubstituted muconate, thus explaining the different phenotypic behaviors of R. eutropha strains containing different tfd gene modules. The enzyme catalyzes the formation of an equilibrium between 2-chloromuconate and 5-chloro- and 2-chloromuconolactone and very inefficiently catalyzes dehalogenation to form trans-dienelactone as the major product, thus differing from all (chloro)muconate cycloisomerases described thus far.

Indexed as

DioxygenasesGenes, BacterialOxidoreductases Acting on CH-CH Group Donors2,4-Dichlorophenoxyacetic AcidAdipatesCarboxylic Ester HydrolasesCatecholsChlorobenzoatesCulture MediaCupriavidus necatorGene Expression Regulation, BacterialIntramolecular LyasesMixed Function OxygenasesOxidoreductasesOxygenasesPlasmids2,4-dichlorophenoxyacetate-alpha-ketoglutarate dioxygenase2,4-Dichlorophenoxyacetic Acid2-chloromuconic acid3-chlorobenzoic acidAdipatesCarboxylic Ester HydrolasescarboxymethylenebutenolidaseCatecholsChlorobenzoateschlorocatechol 1,2-dioxygenasechloromuconate cycloisomeraseCulture MediaDioxygenasesIntramolecular Lyasesmaleylacetate reductaseMixed Function Oxygenasesmuconic acidOxidoreductasesOxidoreductases Acting on CH-CH Group DonorsOxygenasesSorbic Acid

Identifiers

PMID12107121
PMCPMC135226
OpenAlexW2132507909

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.