Evidence map›Paper›PMID 12101254›Full record

ArticleMolecular and cellular biology2002

TRAP/SMCC/mediator-dependent transcriptional activation from DNA and chromatin templates by orphan nuclear receptor hepatocyte nuclear factor 4.

Sohail Malik, Annika E Wallberg, Yun Kyoung Kang, Robert G Roeder

Open access · bronzeAbstract read
In one paragraph

Article in Molecular and cellular biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed, 96 citations in OpenAlex.

  1. Review
  2. Review
  3. Unique and overlapping roles of NRF2 and NRF1 in transcriptional regulation.Journal of clinical biochemistry and nutrition · 2024
    Article
  4. Review
  5. Article
  6. LncRNA Lnc-APUE is Repressed by HNF4Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2021
    Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Transcription regulation by the Mediator complex.Nature reviews. Molecular cell biology · 2018
    Review
  12. Review
  13. Article
  14. Article
  15. The Mediator complex: a central integrator of transcription.Nature reviews. Molecular cell biology · 2015
    Review
  16. Review
  17. Article
  18. Article
  19. Review
  20. Mechanisms of Mediator complex action in transcriptional activation.Cellular and molecular life sciences : CMLS · 2013
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sohail MalikLaboratory of Biochemistry and Molecular Biology, The Rockefeller University, New York, NY 10021, USA. maliks@rockvax.rockefeller.edu
Annika E Wallberg
Yun Kyoung Kang
Robert G Roeder
Rockefeller University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The orphan nuclear receptor hepatocyte nuclear factor 4 (HNF-4) regulates the expression of many liver-specific genes both during development and in the adult animal. Towards understanding the molecular mechanisms by which HNF-4 functions, we have established in vitro transcription systems that faithfully recapitulate HNF-4 activity. Here we have focused on the coactivator requirements for HNF-4, especially for the multicomponent TRAP/SMCC/Mediator complex that has emerged as the central regulatory module of the transcription apparatus. Using a system that has been reconstituted from purified transcription factors, as well as one consisting of unfractionated nuclear extract from which TRAP/SMCC/Mediator has been depleted by specific antibodies, we demonstrate a strong dependence of HNF-4 function on this coactivator. Importantly, we further show a TRAP/SMCC/Mediator-dependence for HNF-4 transcriptional activation from chromatin templates. The latter involves cooperation with the histone acetyltransferase-containing coactivator p300, in accord with a synergistic mode of action of the two divergent coactivators. We also show that HNF-4 and TRAP/SMCC/Mediator can interact physically. This interaction likely involves primary HNF-4 activation function 2 (AF-2)-dependent interactions with the TRAP220 subunit of TRAP/SMCC/Mediator and secondary (AF-2-independent) interactions with TRAP170/RGR1. Finally, recruitment experiments using immobilized templates strongly suggest that the functional consequences of the physical interaction probably are manifested at a postrecruitment step in the activation pathway.

Indexed as

DNA-Binding ProteinsAcetyltransferasesBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCarrier ProteinsCell Cycle ProteinsCell ExtractsCell LineCell NucleusChromatinDNAElectrophoretic Mobility Shift AssayHeLa CellsHepatocyte Nuclear Factor 4Histone AcetyltransferasesHumansImmediate-Early ProteinsAcetyltransferasesBasic Helix-Loop-Helix Leucine Zipper Transcription FactorsCarrier ProteinsCell Cycle ProteinsCell ExtractsChromatinDNADNA-Binding ProteinsHepatocyte Nuclear Factor 4Histone AcetyltransferasesIFRD2 protein, humanIfrd2 protein, mouseImmediate-Early ProteinsMacromolecular SubstancesMED1 protein, humanMed1 protein, mouseMED24 protein, humanMediator ComplexMediator Complex Subunit 1Membrane ProteinsMLX protein, humanp300-CBP-Associated Factorp300-CBP Transcription FactorsPhosphoproteinsRepressor ProteinsTcfl4 protein, mouseTrans-ActivatorsTranscription Factors

Identifiers

PMID12101254
PMCPMC133960
OpenAlexW2154894786

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.