Evidence map›Paper›PMID 12101097›Full record

ArticleEMBO reports2002

Intranuclear degradation of nonsense codon-containing mRNA.

Marc Bühler, Miles F Wilkinson, Oliver Mühlemann

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Small ORFs as New Regulators of Pri-miRNAs and miRNAs Expression inInternational journal of molecular sciences · 2022
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  4. Review
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  13. Article
  14. Nonsense codons trigger an RNA partitioning shift.The Journal of biological chemistry · 2009
    Article
  15. Expression of two novel alternatively spliced COL2A1 isoforms during chondrocyte differentiation.Matrix biology : journal of the International Society for Matrix Biology · 2008
    Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Marc BühlerInstitute of Cell Biology, University of Bern, Baltzerstrasse-4, Switzerland.
Miles F Wilkinson
Oliver Mühlemann
University of Bern · CHThe University of Texas MD Anderson Cancer Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Most vertebrate mRNAs with premature termination codons (PTCs) are specifically recognized and degraded by a process referred to as nonsense-mediated mRNA decay (NMD) while still associated with the nucleus. However, it is still a matter of debate whether PTCs can be identified by intranuclear scanning or only by ribosomes on the cytoplasmic side of the nuclear envelope. Here we show that inhibition of mRNA export by two independent approaches does not affect the downregulation of PTC-containing T-cell receptor beta transcripts in the nuclear fraction of mammalian cells, providing strong evidence for intranuclear NMD. Our results are fully consistent with recently reported evidence for nuclear translation and suggest that an important biological role for nuclear ribosomes is the early elimination of nonsense mRNA during a pioneer round of translation.

Indexed as

Codon, NonsenseActive Transport, Cell NucleusAnimalsCell FractionationCell NucleusGreen Fluorescent ProteinsHeLa CellsHumansIn Situ Hybridization, FluorescenceLuminescent ProteinsOocytesProtein BiosynthesisRecombinant Fusion ProteinsRibosomesRNA, MessengerViral Matrix ProteinsCodon, NonsenseGreen Fluorescent ProteinsLuminescent ProteinsM protein, Vesicular stomatitis virusRecombinant Fusion ProteinsRNA, MessengerViral Matrix Proteins

Identifiers

PMID12101097
PMCPMC1084183
OpenAlexW1998136850

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.