Evidence map›Paper›PMID 12097589›Full record

ArticleJournal of virology2002

Oligomeric and conformational properties of a proteolytically mature, disulfide-stabilized human immunodeficiency virus type 1 gp140 envelope glycoprotein.

Norbert Schülke, Mika S Vesanen, Rogier W Sanders, Ping Zhu, Min Lu, Deborah J Anselma, Anthony R Villa, Paul W H I Parren, James M Binley, Kenneth H Roux and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
4.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 150 citations in OpenAlex.

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29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 1 country.

Norbert SchülkeProgenics Pharmaceuticals Inc., Tarrytown, New York 10591, USA.
Mika S Vesanen
Rogier W Sanders
Ping Zhu
Min Lu
Deborah J Anselma
Anthony R Villa
Paul W H I Parren
James M Binley
Kenneth H Roux
Paul J Maddon
John P Moore
William C Olson
Progenics Pharmaceuticals (United States) · USCornell University · USFlorida State University · USScripps Research Institute · US

Funding

MODIFIED ENVELOPE GLYCOPROTEINS FOR HIV1 VACCINER01AI045463 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI MOORE, JOHN P · 1999 to 2010
$4.2M
HIV Vaccine Design and Development TeamR01AI049764 · NIAID · PROGENICS PHARMACEUTICALS, INC. · PI MADDON, PAUL J · 2000 to 2001
$4.1M
STRUCTURE AND FUNCTION OF THE HIV-1 ENVELOPE PROTEINR01AI042382 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI LU, MIN · 1999 to 2008
$3.1M
TOPOLOGICAL ANALYSIS OF HIV-1 ENVELOPE GLYCOPROTEINSR01AI039420 · NIAID · DANA-FARBER CANCER INSTITUTE · PI SODROSKI, JOSEPH G · 1996 to 2004
$1.6M
STABILIZING ENV IN VIRUS-LIKE PARTICLE IMMUNOGENSR21AI049566 · NIAID · WEILL MEDICAL COLLEGE OF CORNELL UNIV · PI BINLEY, JAMES M · 2000 to 2001
$520k
An Innovative Wearable Sensor For The Early Detection and Prevention Of Fatal Opioid OverdoseR21DA049566 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI IMPERATO-MCGINLEY, JULIANNE L, KAN, EDWIN C · 2020 to 2021
$444k
ELECTRON MICROSCOPIC ANALYSIS OF GP120/GP160R21AI044291 · NIAID · FLORIDA STATE UNIVERSITY · PI ROUX, KENNETH H · 1998 to 1999
–
NIAID NIH HHS R01 AI039420NIAID NIH HHS R01 AI042382NIAID NIH HHS R01 AI045463NIAID NIH HHS R01 AI39420NIAID NIH HHS R01 AI42382NIAID NIH HHS R01 AI45463NIAID NIH HHS R21 AI44291NIAID NIH HHS R21 AI49566NIAID NIH HHS U01 AI49764NIDA NIH HHS R21 DA049566
6 · The paper itself

Abstract

We describe the further properties of a protein, designated SOS gp140, wherein the association of the gp120 and gp41 subunits of the human immunodeficiency virus type 1 (HIV-1) envelope glycoprotein is stabilized by an intersubunit disulfide bond. HIV-1(JR-FL) SOS gp140, proteolytically uncleaved gp140 (gp140(UNC)), and gp120 were expressed in stably transfected Chinese hamster ovary cells and analyzed for antigenic and structural properties before and after purification. Compared with gp140(UNC), SOS gp140 reacted more strongly in surface plasmon resonance and radioimmunoprecipitation assays with the neutralizing monoclonal antibodies (MAbs) 2G12 (anti-gp120), 2F5 (anti-gp41), and 17b (to a CD4-induced epitope that overlaps the CCR5-binding site). In contrast, gp140(UNC) displayed the greater reactivity with nonneutralizing anti-gp120 and anti-gp41 MAbs. Immunoelectron microscopy studies suggested a model for SOS gp140 wherein the gp41 ectodomain (gp41(ECTO)) occludes the "nonneutralizing" face of gp120, consistent with the antigenic properties of this protein. We also report the application of Blue Native polyacrylamide gel electrophoresis (BN-PAGE), a high-resolution molecular sizing method, to the study of viral envelope proteins. BN-PAGE and other biophysical studies demonstrated that SOS gp140 was monomeric, whereas gp140(UNC) comprised a mixture of noncovalently associated and disulfide-linked dimers, trimers, and tetramers. The oligomeric and conformational properties of SOS gp140 and gp140(UNC) were largely unaffected by purification. An uncleaved gp140 protein containing the SOS cysteine mutations (SOS gp140(UNC)) was also oligomeric. Surprisingly, variable-loop-deleted SOS gp140 proteins were expressed (although not yet purified) as cleaved, noncovalently associated oligomers that were significantly more stable than the full-length protein. Overall, our findings have relevance for rational vaccine design.

Indexed as

Gene Products, envProtein ConformationAnimalsAntibodies, MonoclonalCHO CellsCricetinaeDimerizationDisulfidesenv Gene Products, Human Immunodeficiency VirusHIV Envelope Protein gp120HIV Envelope Protein gp41HumansMicroscopy, ImmunoelectronModels, MolecularRadioimmunoprecipitation AssaySurface Plasmon ResonanceAntibodies, MonoclonalDisulfidesenv Gene Products, Human Immunodeficiency VirusGene Products, envgp140 envelope protein, Human immunodeficiency virus 1HIV Envelope Protein gp120HIV Envelope Protein gp41

Identifiers

PMID12097589
PMCPMC136400
OpenAlexW1994030446

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.