Evidence map›Paper›PMID 12097339›Full record

ArticleGenome research2002

Lymphopenia in the BB rat model of type 1 diabetes is due to a mutation in a novel immune-associated nucleotide (Ian)-related gene.

Armand J MacMurray, Daniel H Moralejo, Anne E Kwitek, Elizabeth A Rutledge, Brian Van Yserloo, Paul Gohlke, Sara J Speros, Ben Snyder, Jonathan Schaefer, Sabine Bieg and 10 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genome research, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 227 citations in OpenAlex.

  1. Quantitative temporal analysis of pancreatic islet T lymphocyte and macrophage infiltration heralded by serum IgE in congenic BioBreeding (BB) Gimap5Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2025
    Article
  2. Article
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  5. Essential role of MFSD1-GLMP-GIMAP5 in lymphocyte survival and liver homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Review
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  9. Animal models of diabetic retinopathy.Annals of translational medicine · 2021
    Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Quantitative phenotype analysis to identify, validate and compare rat disease models.Database : the journal of biological databases and curation · 2019
    Article
  16. Article
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37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 2 institutions in 2 countries.

Armand J MacMurrayRobert H. Williams Laboratory, Department of Medicine, University of Washington, Seattle, Washington 98195, USA.
Daniel H Moralejo
Anne E Kwitek
Elizabeth A Rutledge
Brian Van Yserloo
Paul Gohlke
Sara J Speros
Ben Snyder
Jonathan Schaefer
Sabine Bieg
Jianjie Jiang
Ruth A Ettinger
Jessica Fuller
Terri L Daniels
Anna Pettersson
Kimberly Orlebeke
Bruce Birren
Howard J Jacob
Eric S Lander
Ake Lernmark
University of Washington · USMedical College of Wisconsin · US

Funding

Vector and Transgenic Mouse CoreP30DK017047 · NIDDK · UNIVERSITY OF WASHINGTON · PI Sakeneh Zraika · 1986 to 2026
$41.4M
EXPERIMENTAL PATHOLOGY OF CARDIOVASCULAR DISEASET32HL007312 · NHLBI · UNIVERSITY OF WASHINGTON · PI MAJESKY, MARK W., SCHWARTZ, STEPHEN MARK · 1985 to 2019
$11.8M
GENETIC CONTROL OF BB RAT AUTOIMMUNITY.P01AI042380 · NIAID · UNIVERSITY OF WASHINGTON · PI LERNMARK, AKE · 1997 to 2009
$8.2M
NHLBI NIH HHS T32 HL007312NHLBI NIH HHS T32-HL07312NIAID NIH HHS AI42380NIAID NIH HHS P01 AI042380NIDDK NIH HHS DK17047NIDDK NIH HHS P30 DK017047
6 · The paper itself

Abstract

The BB (BioBreeding) rat is one of the best models of spontaneous autoimmune diabetes and is used to study non-MHC loci contributing to Type 1 diabetes. Type 1 diabetes in the diabetes-prone BB (BBDP) rat is polygenic, dependent upon mutations at several loci. Iddm1, on chromosome 4, is responsible for a lymphopenia (lyp) phenotype and is essential to diabetes. In this study, we report the positional cloning of the Iddm1/lyp locus. We show that lymphopenia is due to a frameshift deletion in a novel member (Ian5) of the Immune-Associated Nucleotide (IAN)-related gene family, resulting in truncation of a significant portion of the protein. This mutation was absent in 37 other inbred rat strains that are nonlymphopenic and nondiabetic. The IAN gene family, lying within a tight cluster on rat chromosome 4, mouse chromosome 6, and human chromosome 7, is poorly characterized. Some members of the family have been shown to be expressed in mature T cells and switched on during thymic T-cell development, suggesting that Ian5 may be a key factor in T-cell development. The lymphopenia mutation may thus be useful not only to elucidate Type 1 diabetes, but also in the function of the Ian gene family as a whole.

Indexed as

Disease Models, AnimalAmino Acid SequenceAnimalsAnimals, CongenicApoptosis Regulatory ProteinsDiabetes Mellitus, Type 1GTP-Binding ProteinsHematopoietic Stem CellsHumansLymphopeniaMiceMolecular Sequence DataProtein Tyrosine Phosphatase, Non-Receptor Type 1Protein Tyrosine Phosphatase, Non-Receptor Type 22Protein Tyrosine PhosphatasesRatsApoptosis Regulatory ProteinsGIMAP4 protein, humanGTP-Binding ProteinsIan1 protein, mouseProtein Tyrosine Phosphatase, Non-Receptor Type 1Protein Tyrosine Phosphatase, Non-Receptor Type 22Protein Tyrosine PhosphatasesPTPN22 protein, humanPtpn22 protein, mouse

Identifiers

PMID12097339
PMCPMC186618
OpenAlexW2098667427

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.