Evidence map›Paper›PMID 12097146›Full record

ArticleBMC cell biology2002

Probing the importance and potential roles of the binding of the PH-domain protein Boi1 to acidic phospholipids.

Mark A Hallett, H Shuen Lo, Alan Bender

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC cell biology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 36 citations in OpenAlex.

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  13. Cell wall integrity signaling in Saccharomyces cerevisiae.Microbiology and molecular biology reviews : MMBR · 2005
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Mark A HallettDepartment of Biology, Indiana University, Bloomington, IN 47405, USA. hallettm@iupui.edu
H Shuen Lo
Alan Bender
Indiana University Bloomington · USNational Institutes of Health · US

Funding

CONTROL OF BUD EMERGENCE IN YEASTR01GM046271 · NIGMS · INDIANA UNIVERSITY BLOOMINGTON · PI BENDER, ALAN D · 1996 to 1999
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CONTROL OF BUD EMERGENCE IN YEASTR29GM046271 · NIGMS · INDIANA UNIVERSITY BLOOMINGTON · PI BENDER, ALAN D · 1991 to 1995
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NIGMS NIH HHS GM46271
6 · The paper itself

Abstract

backgroundThe related proteins Boi1 and Boi2, which appear to promote polarized growth in S. cerevisiae, both contain a PH (pleckstrin homology) and an SH3 (src homology 3) domain. Previously, we gained evidence that a PH domain-bearing segment of Boi1, which we call Boi1-PH, is sufficient and necessary for function. In the current study, we investigate the binding of Boi1's PH domain to the acidic phospholipids PIP2 (phosphatidylinositol-4,5-bisphosphate) and PS (phosphatidylserine).

resultsBoi1-PH co-sediments with PS vesicles. It does so more readily when these vesicles contain a small amount of PIP2. Boi1-PH is degraded in yeast extracts in a manner that is stimulated by PIP2. Amino-acid substitutions that diminish binding to PIP2 and PS impair Boi1 function. Fusion to a myristoyl group-accepting sequence improves to different degrees the ability of these different mutant versions of Boi1-PH to function. Boi1 and Boi2 are localized to the periphery of buds during much of the budding cycle and to necks late in the cell cycle. Amino-acid substitutions that diminish binding to PIP2 and PS impair localization of Boi1 to the bud, but do not affect the localization of Boi1 to the neck. Conversely, a mutation in the SH3 domain prevents the localization of Boi1 to the neck, but does not impair localization to the bud.

conclusionsBoi1's PH domain binds to acidic phospholipids, and this binding appears to be important for Boi1 function. The main role of binding to PS may simply be to promote the association of the PH domain with membrane. The higher-affinity binding to PIP2, which apparently promotes a conformational change in the PH domain, may play an important additional role. Boi1 and Boi2 are localized to sites of polarized growth. Whereas the SH3 domain is needed for localization of Boi1 to the neck, the phospholipid-binding portion of the PH domain is important for localization to the bud.

Indexed as

Adaptor Proteins, Signal TransducingBinding SitesBlood ProteinsCarrier ProteinsFungal ProteinsMutationPhosphatidylinositol 4,5-DiphosphatePhospholipidsPhosphoproteinsProtein BindingSaccharomyces cerevisiae ProteinsSequence Homology, Amino Acidsrc Homology DomainsAdaptor Proteins, Signal TransducingBlood ProteinsBOI1 protein, S cerevisiaeBOI2 protein, S cerevisiaeCarrier ProteinsFungal ProteinsPhosphatidylinositol 4,5-DiphosphatePhospholipidsPhosphoproteinsplatelet protein P47Saccharomyces cerevisiae Proteins

Identifiers

PMID12097146
PMCPMC117597
OpenAlexW1836534371

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.