Evidence map›Paper›PMID 12093916›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

Evidence for a cytopathogenicity determinant in HIV-1 Vpr.

Mohan Somasundaran, Mark Sharkey, Beda Brichacek, Katherine Luzuriaga, Michael Emerman, John L Sullivan, Mario Stevenson

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.5field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 101 citations in OpenAlex.

  1. Article
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  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Yeast for virus research.Microbial cell (Graz, Austria) · 2017
    Review
  11. The HIV-1 Vpr Protein: A Multifaceted Target for Therapeutic Intervention.International journal of molecular sciences · 2017
    Review
  12. Retroviral DNA Integration.Chemical reviews · 2016
    Review
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Mohan SomasundaranProgram in Molecular Medicine, University of Massachusetts Medical School, 373 Plantation Street, Worcester, MA 01605, USA.
Mark Sharkey
Beda Brichacek
Katherine Luzuriaga
Michael Emerman
John L Sullivan
Mario Stevenson
Fred Hutch Cancer Center · USUniversity of Massachusetts Chan Medical School · US

Funding

UMASS MEDICAL CENTER FOR AIDS RESEARCHP30AI042845 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 1998 to 2012
$13.0M
WESTERN NEW ENGLAND PEDIATRIC AIDS CLINICAL TRIALS UNITU01AI032907 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI LUZURIAGA, KATHERINE F · 1992 to 2006
$6.5M
ROLE OF MONOCYTOTROPISM IN HIV/SIV PATHOGENICITYR01RR011589 · NCRR · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STEVENSON, MARIO · 1995 to 2008
$3.8M
FUNCTION FOR VPR AND VPX OF PRIMATE LENTIVIRUSESR37AI037475 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STEVENSON, MARIO · 2000 to 2009
$3.6M
ROLE OF HIV-1 GAG MA IN VIRAL ENTRYR01AI032890 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STEVENSON, MARIO · 1992 to 2011
$3.3M
FUNCTION FOR VPR AND VPX OF PRIMATE LENTIVIRUSESR01AI037475 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI STEVENSON, MARIO · 1995 to 1999
–
NCRR NIH HHS R01 RR011589NCRR NIH HHS RR11589NIAID NIH HHS AI32890NIAID NIH HHS AI32907NIAID NIH HHS AI37475NIAID NIH HHS AI42845NIAID NIH HHS P30 AI042845NIAID NIH HHS R01 AI032890NIAID NIH HHS R01 AI037475NIAID NIH HHS R37 AI037475
6 · The paper itself

Abstract

HIV-1 is cytopathic for CD4(+) T lymphocytes in vitro and this property of HIV-1 is generally considered to account for some of its in vivo cytopathogenicity. Thus, the extent of lymphocyte depletion correlates with the level of viremia whereas low levels of viral replication are typically associated with stable lymphocyte levels and asymptomatic infection such as is observed in non-progressors. Here, we describe a non-progressor who did not fit this general pattern in that CD4(+) T lymphocyte homeostasis was maintained in the face of high-level viral replication. Biological viral isolates from this patient replicated in primary lymphocytes without inducing cytopathicity. Because this phenotype is reminiscent of Vpr-deleted viruses, we examined the contribution of the Vpr gene to the viral phenotype. Vpr alleles derived from this patient contained both premature stop codons and an unusual Q3R polymorphism. Insertion of patient-derived Vpr alleles or a Q3R substitution into a cytopathic HIV-1 clone resulted in a marked impairment of cytopathicity without affecting viral replication efficiency. The effect of Vpr on cytopathicity was unrelated to reported activities of Vpr including virion association, interaction with uracil DNA glycosylase, G(2) arrest, or enhancement of macrophage infection but correlated with the ability of Vpr to induce host cell apoptosis. This study suggests the presence of a determinant of in vivo cytopathogenicity within HIV-1 Vpr and further indicates that viral replication can be uncoupled from cytopathicity in vitro and in vivo.

Indexed as

AllelesApoptosisCD4-Positive T-LymphocytesCytopathogenic Effect, ViralGene Products, vprGenes, vprHIV-1HIV InfectionsHIV Long-Term SurvivorsHumansIn Vitro TechniquesMutationPolymorphism, Geneticvpr Gene Products, Human Immunodeficiency VirusGene Products, vprvpr Gene Products, Human Immunodeficiency Virus

Identifiers

PMID12093916
PMCPMC123170
OpenAlexW2155555683

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.