Evidence map›Paper›PMID 12087126›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2002

Distinct domains of splicing factor Prp8 mediate different aspects of spliceosome activation.

Andreas N Kuhn, Elizabeth M Reichl, David A Brow

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 82 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Cisplatin protects mice from challenge ofEmerging microbes & infections · 2019
    Article
  5. Review
  6. Structural toggle in the RNaseH domain of Prp8 helps balance splicing fidelity and catalytic efficiency.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Structural analyses of the pre-mRNA splicing machinery.Protein science : a publication of the Protein Society · 2013
    Review
  17. Article
  18. Article
  19. RNA helicases in splicing.RNA biology · 2013
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Andreas N KuhnDepartment of Biomolecular Chemistry, University of Wisconsin Medical School, Madison, WI 53706-1532, USA.
Elizabeth M Reichl
David A Brow
University of Wisconsin–Madison · USJohns Hopkins University · US

Funding

RNA DYNAMICS IN THE SPLICEOSOMER01GM054018 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BROW, DAVID A · 1997 to 2006
$1.1M
NIGMS NIH HHS GM54018NIGMS NIH HHS R01 GM054018
6 · The paper itself

Abstract

Prp8 is the largest and most highly conserved protein in the spliceosome yet its mechanism of function is poorly understood. Our previous studies implicate Prp8 in control of spliceosome activation for the first catalytic step of splicing, because substitutions in five distinct regions (a-e) of Prp8 suppress a cold-sensitive block to activation caused by a mutation in U4 RNA. Catalytic activation of the spliceosome is thought to require unwinding of the U1 RNA/5' splice site and U4/U6 RNA helices by the Prp28 and Prp44/Brr2 DExD/H-box helicases, respectively. Here we show that mutations in regions a, d, and e of Prp8 exhibit allele-specific genetic interactions with mutations in Prp28, Prp44/Brr2, and U6 RNA, respectively. These results indicate that Prp8 coordinates multiple processes in spliceosome activation and enable an initial correlation of Prp8 structure and function. Furthermore, additional genetic interactions with U4-cs1 support a two-state model for this RNA conformational switch and implicate another splicing factor, Prp31, in Prp8-mediated spliceosome activation.

Indexed as

AllelesAmino Acid SequenceBase SequenceCold TemperatureDEAD-box RNA HelicasesFungal ProteinsMolecular Sequence DataMutationProtein Structure, TertiaryRepressor ProteinsRibonucleoprotein, U4-U6 Small NuclearRibonucleoprotein, U5 Small NuclearRNA, FungalRNA HelicasesRNA NucleotidyltransferasesRNA, Small NuclearBRR2 protein, S cerevisiaeDEAD-box RNA HelicasesFungal ProteinsPRP28 protein, S cerevisiaePRP8 protein, S cerevisiaeRepressor ProteinsRibonucleoprotein, U4-U6 Small NuclearRibonucleoprotein, U5 Small NuclearRNA, FungalRNA HelicasesRNA NucleotidyltransferasesRNA, Small NuclearSaccharomyces cerevisiae ProteinsU4 small nuclear RNA

Identifiers

PMID12087126
PMCPMC123108
OpenAlexW2018574323

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.