Evidence map›Paper›PMID 12082624›Full record

ArticleOncogene2002

Aberrant promoter methylation and silencing of the RASSF1A gene in pediatric tumors and cell lines.

Kenichi Harada, Shinichi Toyooka, Anirban Maitra, Riichiroh Maruyama, Kiyomi O Toyooka, Charles F Timmons, Gail E Tomlinson, Domenico Mastrangelo, Robert J Hay, John D Minna and 1 more

Abstract read
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In one paragraph

Article in Oncogene, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 2 pooled it
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 2 syntheses or guidelines pooled it, 225 citations in OpenAlex.

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  17. DNA methylation in Hepatoblastoma-a literature review.Italian journal of pediatrics · 2020
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16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Kenichi HaradaHamon Center for Therapeutic Oncology Research, University of Texas Southwestern Medical Center, Dallas, Texas, TX 75390, USA.
Shinichi Toyooka
Anirban Maitra
Riichiroh Maruyama
Kiyomi O Toyooka
Charles F Timmons
Gail E Tomlinson
Domenico Mastrangelo
Robert J Hay
John D Minna
Adi F Gazdar
The University of Texas Southwestern Medical Center · USAmerican Type Culture Collection · USChildren's Medical Center · USUniversity of Siena · IT

Funding

Novel Reagents and New Biomarkers for Lung CancerU01CA084971 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI GAZDAR, ADI F. · 1999 to 2009
$4.5M
NCI NIH HHS U01CA8497102
6 · The paper itself

Abstract

Aberrant promoter methylation of tumor suppressor genes has not been fully investigated in pediatric tumors. Therefore, we examined the methylation status of nine genes (p16(INK4A), MGMT, GSTP1, RASSF1A, APC, DAPK, RARbeta, CDH1 and CDH13) in 175 primary pediatric tumors and 23 tumor cell lines using methylation-specific PCR. We studied the major forms of pediatric tumors--Wilms' tumor, neuroblastoma, hepatoblastoma, medulloblastoma, rhabdomyosarcoma, osteosarcoma, Ewing's sarcoma, retinoblastoma and acute leukemia. The most frequently methylated gene in both primary tumors and cell lines was RASSF1A (40, 86%, respectively). However, the rates of RASSF1A methylation in individual tumor types varied from 0 to 88%. RASSF1A methylation was tumor specific and was absent in adjacent non-malignant tissues. Methylation of the other genes was relatively rare in tumors and non-malignant tissues (less than 5%). Neuroblastoma patients with methylation of RASSF1A were significantly older than patients without methylation (P=0.008). There was no relationship between methylation status and other clinico-pathologic parameters. We treated six cell lines lacking RASSF1A mRNA with 5-aza-2'deoxycytidine to examine the relationship between methylation and transcriptional silencing. In five of six cell lines, restoration of RASSF1A mRNA was confirmed by RT-PCR. Our findings indicate that aberrant promoter methylation of RASSF1A may contribute to the pathogenesis of many different forms of pediatric tumors.

Indexed as

DNA MethylationGene Expression Regulation, NeoplasticGene SilencingGenes, Tumor SuppressorTumor Suppressor ProteinsAllelesCell Transformation, NeoplasticChildChild, PreschoolChromosomes, Human, Pair 3DNA, NeoplasmGene Expression ProfilingHumansInfantNeoplasm ProteinsNeoplasmsDNA, NeoplasmNeoplasm ProteinsRASSF1 protein, humanTumor Suppressor Proteins

Identifiers

PMID12082624
OpenAlexW1964646880

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.