Evidence map›Paper›PMID 12082623›Full record

ArticleOncogene2002

Progressive aberrant methylation of the RASSF1A gene in simian virus 40 infected human mesothelial cells.

Shinichi Toyooka, Michele Carbone, Kiyomi O Toyooka, Maurizio Bocchetta, Narayan Shivapurkar, John D Minna, Adi F Gazdar

Abstract read
PubMed Publisher
In one paragraph

Article in Oncogene, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 84 citations in OpenAlex.

  1. Trial
  2. Review
  3. Review
  4. Review
  5. SV40 and human mesothelioma.Translational lung cancer research · 2020
    Review
  6. Article
  7. Review
  8. Article
  9. Viral epigenetics.Methods in molecular biology (Clifton, N.J.) · 2015
    Review
  10. Review
  11. Desmoplastic malignant mesothelioma originating from the peritoneum.Medical oncology (Northwood, London, England) · 2012
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Shinichi ToyookaHamon Center for Therapeutic Oncology Research, University of Texas Southwestern Medical Center, Dallas, Texas, TX 75390, USA.
Michele Carbone
Kiyomi O Toyooka
Maurizio Bocchetta
Narayan Shivapurkar
John D Minna
Adi F Gazdar
The University of Texas Southwestern Medical Center · USLoyola University Chicago · US

Funding

UNIVERSITY OF TEXAS--SPORE IN LUNG CANCERP50CA070907 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI GIBBONS, DON LYNN · 1996 to 2024
$57.4M
Novel Reagents and New Biomarkers for Lung CancerU01CA084971 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI GAZDAR, ADI F. · 1999 to 2009
$4.5M
HUMAN 3P RECESSIVE ONCOGENESR01CA071618 · NCI · UNIVERSITY OF TEXAS SW MED CTR/DALLAS · PI MINNA, JOHN D · 1996 to 2004
$1.4M
NCI NIH HHS 5U01CA8497102NCI NIH HHS P50CA70907NCI NIH HHS R01 CA2657NCI NIH HHS R01 CA 71618
6 · The paper itself

Abstract

Mesotheliomas are tumors arising from mesothelial cells and are associated with asbestos exposure and approximately 50% contain simian virus 40 (SV40) DNA sequences. SV40 infection of human mesothelial cells (HM) causes early cellular immortalization and late transformation. Aberrant methylation is a major mech-anism for loss of function of tumor suppressor genes (TSGs). We recently reported that of seven genes frequently methylated in epithelial tumors, only RASSF1A gene was frequently methylated in mesotheliomas, and its methylation was correlated with loss of RASSF1A expression and the presence of SV40. We studied whether SV40 infection of normal HM induces aberrant methylation of the genes previously studied in mesotheliomas. Of six infected foci examined at early passages (passages 8-30) there was no methylation of the seven genes examined. Of two foci examined at late passages (passages 51-86) after the appearance of morphological changes suggestive of transformation, methylation and loss of expression of RASSF1A was detected. Sequencing of the CpG dense region around the transcription start site and semi-quantitative real-time methylation specific PCR (MSP) assay for RASSF1A methylation demonstrated progressive methylation during late passages. Exposure to the demethylating agent 5-aza-2'-deoxycytidine restored RASSF1A expression, while exposure to the histone deacetylation inhibitor trichostatin A had no effect. These data, together with our previous findings, support a causal relationship between SV40 infection, progressive RASSF1A methylation and its silencing, and the pathogenesis of mesothelioma.

Indexed as

CocarcinogenesisDNA MethylationGene SilencingGenes, Tumor SuppressorTumor Suppressor ProteinsAllelesAzacitidineCell Line, TransformedCell Transformation, ViralCpG IslandsDecitabineDNA, NeoplasmGene Expression RegulationHumansHydroxamic AcidsMesotheliomaAzacitidineDecitabineDNA, NeoplasmHydroxamic AcidsNeoplasm ProteinsRASSF1 protein, humantrichostatin ATumor Suppressor Proteins

Identifiers

PMID12082623
OpenAlexW2326276503

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.