Evidence map›Paper›PMID 12081955›Full record

ArticleJournal of bacteriology2002

Mutations in the CCGTTCACA DnaA box of Mycobacterium tuberculosis oriC that abolish replication of oriC plasmids are tolerated on the chromosome.

Jaroslaw Dziadek, Malini Rajagopalan, Tanya Parish, Natalia Kurepina, Rebecca Greendyke, Barry N Kreiswirth, Murty V V S Madiraju

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Novel Isoniazid-Carborane Hybrids Active in Vitro AgainstPharmaceuticals (Basel, Switzerland) · 2020
    Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Jaroslaw DziadekDepartment of Biochemistry, The University of Texas Health Center at Tyler, 75708-3154, USA.
Malini Rajagopalan
Tanya Parish
Natalia Kurepina
Rebecca Greendyke
Barry N Kreiswirth
Murty V V S Madiraju
The University of Texas Health Science Center at Tyler · USQueen Mary University of London · GB

Funding

Mycobacterium tuberculosis cell division and proliferationR01AI048417 · NIAID · UNIVERSITY OF TEXAS HLTH CTR AT TYLER · PI RAJAGOPALAN, MALINI · 2000 to 2011
$3.0M
REPLICATION OF M AVIUM AND NOVEL DRUG TARGETSR01AI041406 · NIAID · UNIVERSITY OF TEXAS HLTH CTR AT TYLER · PI MADIRAJU, MURTY V. · 1997 to 2007
$1.0M
NIAID NIH HHS AI41406NIAID NIH HHS AI48417NIAID NIH HHS R01 AI041406NIAID NIH HHS R01 AI048417
6 · The paper itself

Abstract

The origin of replication (oriC) region in some clinical strains of Mycobacterium tuberculosis is a hot spot for IS6110 elements. To understand how clinical strains with insertions in oriC can replicate their DNA, we characterized the oriC regions of some clinical strains. Using a plasmid-based oriC-dependent replication assay, we showed that IS6110 insertions that disrupted the DnaA box sequence CCGTTCACA abolished oriC activity in M. tuberculosis. Furthermore, by using a surface plasmon resonance technique we showed that purified M. tuberculosis DnaA protein binds native but not mutant DnaA box sequence, suggesting that stable interactions of the DnaA protein with the CCGTTCACA DnaA box are crucial for replication of oriC plasmids in vivo. Replacement by homologous recombination of the CCGTTCACA DnaA box sequence of the laboratory strain M. tuberculosis H37Ra with a mutant sequence did not result in nonviability. Together, these results suggest that M. tuberculosis strains have evolved mechanisms to tolerate mutations in the oriC region and that functional requirements for M. tuberculosis oriC replication are different for chromosomes and plasmids.

Indexed as

Chromosomes, BacterialMutationPlasmidsReplication OriginBacterial ProteinsBase SequenceDNA-Binding ProteinsDNA Transposable ElementsMolecular Sequence DataMycobacterium tuberculosisBacterial ProteinsDnaA protein, BacteriaDNA-Binding ProteinsDNA Transposable Elements

Identifiers

PMID12081955
PMCPMC135179
OpenAlexW2118683400

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.