Evidence map›Paper›PMID 12080091›Full record

ArticleGenes & development2002

Rap1-Sir4 binding independent of other Sir, yKu, or histone interactions initiates the assembly of telomeric heterochromatin in yeast.

Kunheng Luo, Miguel A Vega-Palas, Michael Grunstein

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 125 papers.

0numbers the graph read from it
0cells of the map it votes in
125citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

125 citing papers in PubMed, 224 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Minimal requirements for the epigenetic inheritance of engineered silent chromatin domains.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Measuring the buffering capacity of gene silencing inProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Review
  11. Regulation of Antigenic Variation byPathogens (Basel, Switzerland) · 2021
    Review
  12. Article
  13. Article
  14. Review
  15. Shelterin Complex at Telomeres: Implications in Ageing.Clinical interventions in aging · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article

65 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Kunheng LuoDepartment of Biological Chemistry, UCLA School of Medicine, 90095, USA.
Miguel A Vega-Palas
Michael Grunstein
University of California, Los Angeles · US

Funding

CHROMOSOMAL REPRESSION OF YEAST HETEROCHROMATINR01GM042421 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GRUNSTEIN, MICHAEL · 1989 to 2010
$4.4M
NIGMS NIH HHS GM42421NIGMS NIH HHS R01 GM042421
6 · The paper itself

Abstract

In Saccharomyces cerevisiae, heterochromatin-like regions are found near telomeres and at the silent mating-type loci, where they can repress genes in an epigenetic manner. Several proteins are involved in telomeric heterochromatin structure including Rap1, Sir2, Sir3, Sir4, yKu70 (Hdf1), yKu80 (Hdf2), and the N termini of histones H3 and H4. By recognizing cis-acting DNA-binding sites, Rap1 is believed to recruit Sir and other silencing proteins and determine where heterochromatin forms. The integrity of heterochromatin also requires the binding of Sir proteins to histones that may form a scaffold for Sir protein interactions with chromatin. In this study we describe how the heterochromatin complex may form initially and how it differs from the complex that spreads along the chromosome. We found that close to the telomere end, Sir4 can bind Rap1 independently of Sir2, Sir3, yKu70/yKu80, and the intact H4 N terminus. In contrast, Sir4 binding requires all of the silencing factors further along telomeric heterochromatin. These data indicate that Sir4 binding to Rap1 initiates the sequential association of Sir and other proteins, allowing the subsequent spreading of the heterochromatin proteins along the chromosome.

Indexed as

Antigens, NuclearDNA HelicasesSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeBinding SitesChromatinChromosomesDNADNA-Binding ProteinsFungal ProteinsGene DeletionGlutathione TransferaseHeterochromatinHistone DeacetylasesHistonesKu AutoantigenAntigens, NuclearChromatinDNADNA-Binding ProteinsDNA HelicasesFungal ProteinsGlutathione TransferaseHeterochromatinhigh affinity DNA-binding factor, S cerevisiaeHistone DeacetylasesHistonesKu AutoantigenLysineNuclear Proteinsrap1 GTP-Binding ProteinsRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinsSilent Information Regulator Proteins, Saccharomyces cerevisiaeSIR2 protein, S cerevisiaeSIR3 protein, S cerevisiaeSIR4 protein, S cerevisiaeSIRT1 protein, humanSirtuin 1Sirtuin 2SirtuinsTrans-ActivatorsXRCC5 protein, humanXrcc6 protein, humanYKU70 protein, S cerevisiaeYKU80 protein, S cerevisiae

Identifiers

PMID12080091
PMCPMC186350
OpenAlexW2111217339

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.