Evidence map›Paper›PMID 12079500›Full record

ArticleBMC biochemistry2002

Identification of critical residues in loop E in the 5-HT3ASR binding site.

Padmavati Venkataraman, Srinivasan P Venkatachalan, Prasad R Joshi, Mani Muthalagi, Marvin K Schulte

Abstract read
In one paragraph

Article in BMC biochemistry, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. 5-HT(3) receptors.The Journal of biological chemistry · 2012
    Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Gating mechanisms in Cys-loop receptors.European biophysics journal : EBJ · 2009
    Review
  10. Review
  11. 5-HT3 receptors.Current pharmaceutical design · 2006
    Review
  12. Tyrosine residues that control binding and gating in the 5-hydroxytryptamine3 receptor revealed by unnatural amino acid mutagenesis.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2004
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Padmavati VenkataramanDepartment of Neurobiology, Northwestern University, Evanston, IL 60201. USA. padma964@hotmail.com
Srinivasan P Venkatachalan
Prasad R Joshi
Mani Muthalagi
Marvin K Schulte

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe serotonin type 3 receptor (5-HT3R) is a member of a superfamily of ligand gated ion channels. All members of this family share a large degree of sequence homology and presumably significant structural similarity. A large number of studies have explored the structure-function relationships of members of this family, particularly the nicotinic and GABA receptors. This information can be utilized to gain additional insights into specific structural and functional features of other receptors in this family.

resultsThirteen amino acids in the mouse 5-HT3ASR that correspond to the putative E binding loop of the nicotinic alpha7 receptor were chosen for mutagenesis. Due to the presence of a highly conserved glycine in this region, it has been suggested that this binding loop is comprised of a hairpin turn and may form a portion of the ligand-binding site in this ion channel family. Mutation of the conserved glycine (G147) to alanine eliminated binding of the 5-HT3R antagonist [3H]granisetron. Three tyrosine residues (Y140, Y142 and Y152) also significantly altered the binding of 5-HT3R ligands. Mutations in neighboring residues had little or no effect on binding of these ligands to the 5-HT3ASR.

conclusionOur data supports a role for the putative E-loop region of the 5-HT3R in the binding of 5-HT, mCPBG, d-tc and lerisetron. 5-HT and mCPBG interact with Y142, d-tc with Y140 and lerisetron with both Y142 and Y152. Our data also provides support for the hypothesis that this region of the receptor is present in a loop structure.

Indexed as

Amino AcidsAmino Acid SequenceAnimalsBinding SitesCell LineHumansKidneyLysineMiceMolecular Sequence DataMutagenesis, Site-DirectedProtein Structure, TertiaryReceptors, SerotoninReceptors, Serotonin, 5-HT3Sequence AlignmentSequence Homology, Amino AcidAmino AcidsLysineReceptors, SerotoninReceptors, Serotonin, 5-HT3Tyrosine

Identifiers

PMID12079500
PMCPMC117120

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.