Evidence map›Paper›PMID 12072467›Full record

ArticleGenetics2002

Efficient repair of DNA breaks in Drosophila: evidence for single-strand annealing and competition with other repair pathways.

Christine R Preston, William Engels, Carlos Flores

Abstract read
In one paragraph

Article in Genetics, 2002. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Drosophila IRBP bZIP heterodimer binds P-element DNA and affects hybrid dysgenesis.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
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  4. Review
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  14. A powerful method combining homologous recombination and site-specific recombination for targeted mutagenesis in Drosophila.Proceedings of the National Academy of Sciences of the United States of America · 2008
    Article
  15. Article
  16. Review
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Christine R PrestonLaboratory of Genetics, University of Wisconsin, Madison, Wisconsin 53706, USA.
William Engels
Carlos Flores

Funding

TRANSPOSITION AND DNA REPAIR IN DROSOPHILAR01GM030948 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ENGELS, WILLIAM R. · 1985 to 2011
$5.2M
DNA Repair and Aging in DrosophilaR56GM030948 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI ENGELS, WILLIAM R. · 2007 to 2007
$490k
NIGMS NIH HHS GM30948
6 · The paper itself

Abstract

We show evidence that DNA double-strand breaks induced in the Drosophila germ line can be repaired very efficiently by the single-strand annealing (SSA) mechanism. A double-strand break was made between two copies of a 1290-bp direct repeat by mobilizing a P transposon. In >80% of the progeny that acquired this chromosome, repair resulted in loss of the P element and loss of one copy of the repeat, as observed in SSA. The frequency of this repair was much greater than seen for gene conversion using an allelic template, which is only approximately 7%. A similar structure, but with a smaller duplication of only 158 bp, also yielded SSA-like repair events, but at a reduced frequency, and gave rise to some products by repair pathways other than SSA. The 1290-bp repeats carried two sequence polymorphisms that were examined in the products. The allele nearest to a nick in the putative heteroduplex intermediate was lost most often. This bias is predicted by the SSA model, although other models could account for it. We conclude that SSA is the preferred repair pathway in Drosophila for DNA breaks between sequence repeats, and it competes with gene conversion by the synthesis-dependent strand annealing (SDSA) pathway.

Indexed as

DNA RepairAnimalsDNA Transposable ElementsDrosophilaGene DuplicationMolecular Sequence DataPolymorphism, GeneticRepetitive Sequences, Nucleic AcidDNA Transposable Elements

Identifiers

PMID12072467
PMCPMC1462149

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.